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The map label for this gene is vapB [H]

Identifier: 39997568

GI number: 39997568

Start: 2711397

End: 2711624

Strand: Reverse

Name: vapB [H]

Synonym: GSU2473

Alternate gene names: 39997568

Gene position: 2711624-2711397 (Counterclockwise)

Preceding gene: 39997569

Following gene: 39997567

Centisome position: 71.09

GC content: 46.93

Gene sequence:

>228_bases
ATGAAAACTGCAAAGATTTTTCAAAATGGACAAAGTCAGGCAGTAAGGCTTCCCAAAGAATTTCGCTTCGAAGACAGCGA
AGTATTCATCAAGAAAAGCGGCAACGTCGTTCAACTGATCCCTCGGAGCGATTCGTGGAATTCCCTCTTCGGCAGTCTCA
AGAAATTCTCCCGCGATTTCATGTCCGAGCGCATACAACCTGAACTGGACAAGCGGGATGGCTTCTGA

Upstream 100 bases:

>100_bases
CCATGTTGGGAGTTCGTTCTCTCATCATTGTTGAAATTTTACTTGCCAACCTAAAACCTGAAATATATACTTCAAATATA
TATTAATGTGGAGGTCAGAA

Downstream 100 bases:

>100_bases
TGAAATTGCTTCTCGACACCAATATCTGCATTTACATCATAAAGCAGCAGCCGGTTGCTGTACTTGAGCGTTTCTTAGAG
TACCAGGTTGGCGATATTGG

Product: virulence associated protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MKTAKIFQNGQSQAVRLPKEFRFEDSEVFIKKSGNVVQLIPRSDSWNSLFGSLKKFSRDFMSERIQPELDKRDGF

Sequences:

>Translated_75_residues
MKTAKIFQNGQSQAVRLPKEFRFEDSEVFIKKSGNVVQLIPRSDSWNSLFGSLKKFSRDFMSERIQPELDKRDGF
>Mature_75_residues
MKTAKIFQNGQSQAVRLPKEFRFEDSEVFIKKSGNVVQLIPRSDSWNSLFGSLKKFSRDFMSERIQPELDKRDGF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 8772; Mature: 8772

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTAKIFQNGQSQAVRLPKEFRFEDSEVFIKKSGNVVQLIPRSDSWNSLFGSLKKFSRDF
CCCCHHHHCCCCCEEECCHHHCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHH
MSERIQPELDKRDGF
HHHCCCCCCCCCCCC
>Mature Secondary Structure
MKTAKIFQNGQSQAVRLPKEFRFEDSEVFIKKSGNVVQLIPRSDSWNSLFGSLKKFSRDF
CCCCHHHHCCCCCEEECCHHHCCCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHH
MSERIQPELDKRDGF
HHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1748867; 1398971; 8169216; 8914257 [H]