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The map label for this gene is vapC

Identifier: 39997567

GI number: 39997567

Start: 2710996

End: 2711397

Strand: Reverse

Name: vapC

Synonym: GSU2472

Alternate gene names: NA

Gene position: 2711397-2710996 (Counterclockwise)

Preceding gene: 39997568

Following gene: 39997566

Centisome position: 71.09

GC content: 46.27

Gene sequence:

>402_bases
ATGAAATTGCTTCTCGACACCAATATCTGCATTTACATCATAAAGCAGCAGCCGGTTGCTGTACTTGAGCGTTTCTTAGA
GTACCAGGTTGGCGATATTGGCATTTCATCCATAACTCTCTCGGAATTGCGCTACGGAGTTGCGAAGAGCACCCATATGG
AGAAAAACGCCAAGGCCCTCGACGAATTCATCATTCCTTTGGAATTGGTTTCTTATGATGAATCGGCGGCTCATGTCTAT
GGAGATATTCGAGCAGCTCTTGAAAAAGCTGGTACGCCCATTGGCTCCATGGATATGTTGATTGCCGCTCACGCTGTATC
GTTAGGAATCCCTCTGGTCACTAATAACACCCGCGAGTTTTTACGGGTCCCTTCCCTCAATATCATTGATTGGACGGTTT
AG

Upstream 100 bases:

>100_bases
GCGATTCGTGGAATTCCCTCTTCGGCAGTCTCAAGAAATTCTCCCGCGATTTCATGTCCGAGCGCATACAACCTGAACTG
GACAAGCGGGATGGCTTCTG

Downstream 100 bases:

>100_bases
CTTTCTTCCAACGCCACAAGCCTGACCGGCGGGTTTCTAGGCCGGTCGTGGCGCTAGTGTACGCCCGGCATGGGCGTGAA
CTAATGGGGTGCAAGTCCCC

Product: virulence associated protein C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MKLLLDTNICIYIIKQQPVAVLERFLEYQVGDIGISSITLSELRYGVAKSTHMEKNAKALDEFIIPLELVSYDESAAHVY
GDIRAALEKAGTPIGSMDMLIAAHAVSLGIPLVTNNTREFLRVPSLNIIDWTV

Sequences:

>Translated_133_residues
MKLLLDTNICIYIIKQQPVAVLERFLEYQVGDIGISSITLSELRYGVAKSTHMEKNAKALDEFIIPLELVSYDESAAHVY
GDIRAALEKAGTPIGSMDMLIAAHAVSLGIPLVTNNTREFLRVPSLNIIDWTV
>Mature_133_residues
MKLLLDTNICIYIIKQQPVAVLERFLEYQVGDIGISSITLSELRYGVAKSTHMEKNAKALDEFIIPLELVSYDESAAHVY
GDIRAALEKAGTPIGSMDMLIAAHAVSLGIPLVTNNTREFLRVPSLNIIDWTV

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 14702; Mature: 14702

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLLDTNICIYIIKQQPVAVLERFLEYQVGDIGISSITLSELRYGVAKSTHMEKNAKAL
CEEEEECCEEEEEECCCCHHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHCCHHHHHHH
DEFIIPLELVSYDESAAHVYGDIRAALEKAGTPIGSMDMLIAAHAVSLGIPLVTNNTREF
HHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCHHHH
LRVPSLNIIDWTV
HCCCCCCEEEECC
>Mature Secondary Structure
MKLLLDTNICIYIIKQQPVAVLERFLEYQVGDIGISSITLSELRYGVAKSTHMEKNAKAL
CEEEEECCEEEEEECCCCHHHHHHHHHHHCCCCCCHHEEHHHHHHHHHHHHCCHHHHHHH
DEFIIPLELVSYDESAAHVYGDIRAALEKAGTPIGSMDMLIAAHAVSLGIPLVTNNTREF
HHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCHHHH
LRVPSLNIIDWTV
HCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]