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The map label for this gene is 39997370

Identifier: 39997370

GI number: 39997370

Start: 2489013

End: 2490224

Strand: Reverse

Name: 39997370

Synonym: GSU2272

Alternate gene names: NA

Gene position: 2490224-2489013 (Counterclockwise)

Preceding gene: 39997372

Following gene: 39997369

Centisome position: 65.29

GC content: 63.28

Gene sequence:

>1212_bases
ATGAAAAATATCATCAACTTTCGCATGGCCGCCGTGCTTGCATCCTGTACGCTCCTTTCCGCCTGCGCCGACGGCGACCT
GCCCTACTCGGACTCCACCAGCATCTCGTCGCCGGCCTATTCCCACAGTGCCGTGTTCCAGAACATGACGACCCTTGCGG
TGTGGGGTAATAACGAGTCCGGCCAGCTCGGTGACGGTACAACCACCTCTGCTGCCACACCTAAGCGGCTCCGGCTCGGC
TTTGCCACCTACTCCAGCGGATTTGCCACCGGGGCCTCACATACCCTCGCCATCGCGCGGTTCGACAACGTGAGCGGGGT
CAGGGCGTGGGGGAGTAATTCGGCCGGACAGATCGGCCGCGATCCCGCAACGGTCCCGACCAGTTCCACACCGGTGAAGA
TCGGCGGCTTCGGCGGTGCCGTTCAGCAGGTGGCGGCCGGCGGACTCCATTCCATGGCTCTGGCCGGAGGCACGGTCTGG
GCGTGGGGCAGCAACAGCGCGGGCCAACTTGCCCTGAACCCGATATCTTCCGCCACCCGCTTCGCCCCCAGGCAGGTTGA
GACGGCCAAACTCCCCATTGCTCCGACCGCCATCGTTGCCGGCGGCAGTCACAGCATCGCCTATACCAGCACCGAGGCCT
ATGCCTGGGGCAACAACGCCAGCGGCCAACTGGGCAACGGAACCACCCTGAGCAACCACATGCCTCAAAAAGTCCAGCTT
CCCTCTTCCATTACGATCCGCAAGATTTCCGCCGGCGGCAGCCACAACCTGGCCCTGGATTCTACCGGCGCGATCTGGGC
CTGGGGGAGCAATGCCTATGGTCAGCTCGGCAACGGCACCACCACCAACCAGAGCACCCCTGTCCAGTTGACGCTTCCTG
CCGGCGTCACCGGATTTATCGACGTGTTTGCCGGTCCGTCCCATTCGGTGGCCGTGGCGAGCAACTTCACGGTTTACACC
TGGGGATTCAATACCCTCGGTCTTCTGTCCGTCGGAACCACCGGCGATCAACTGAGCCCGGCCCAGGTACGCGATGCATC
GAACGTCCCCTTTACCGACGTGGAACGGGTGGTGCTCCTCGGGTCGTTCTTCACGATCGTCAAGAAAAATGGGTCAGGAG
GCATGTGGGCCTGGGGGTATAACGGCTATGGCCAACTCGGCGACGGCACGACCAGTAACCGGACCGCGCCGGTGCAGGTG
GCCCTTCCCTGA

Upstream 100 bases:

>100_bases
TTTTGTACGAGATCGTGGCCGGCAGATAAGGGTGTCCGGATGGCTCCAGAACCGGAGAGCAGTGGCGTACCCATGACCAA
TCACCAGTAGGGAGAAGACA

Downstream 100 bases:

>100_bases
TCCTGTCTTCAACTGTTTGAATATGCAGGCCAAATTGACGGGGTGCGCTCTGTTCGCACCCCGTTTTTCCTTGACTTGGC
ATGCTCCTTTGGCTAAGTTG

Product: lipoprotein

Products: NA

Alternate protein names: BNR Repeat-Containing Protein; Alpha-Tubulin Suppressor; BNR Repeat Containing Protein; Cell Wall Anchor Domain-Containing Protein; S-Layer Domain Protein; RCC1 Repeat-Containing Protein; BNR Repeat Domain Protein; RCC1 Repeat Protein; Fibronectin Type III Domain-Containing Protein; S-Layer Domain-Containing Protein; RCC1 Domain-Containing Protein Alpha-Tubulin Suppressor; Bnr Repeat Domain Protein; Immunoglobulin I-Set Domain-Containing Protein; IPT/TIG Domain Protein; Cellulosome Dockerin Type I; ATS1 Domain Repeat Lipoprotein; RTX Family Exoprotein; Regulator Of Chromosome Condensation-Like Protein; RCC1 Domain-Containing Protein; Rhs Family Protein; Cysteine-Rich Repeat Protein; Ig Domain-Containing Domain-Containing Protein; Cell Surface Receptor IPT/TIG Domain-Containing Protein; Immunoglobulin-Like; BLIP-II Repeat-Containing Protein; Serine/Threonine Protein Kinase; Copper Amine Oxidase Domain Protein; Ig Domain Domain Protein; Hyalin; RCC1 Repeat- And Reductase Domain-Containing Protein; Ig Family Protein; ATS1 Domain Repeat Protein; Copper Amine Oxidase Domain-Containing Protein; Extracellular Serine Protease; Lipoprotein; BNR Repeat Domain-Containing Protein

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MKNIINFRMAAVLASCTLLSACADGDLPYSDSTSISSPAYSHSAVFQNMTTLAVWGNNESGQLGDGTTTSAATPKRLRLG
FATYSSGFATGASHTLAIARFDNVSGVRAWGSNSAGQIGRDPATVPTSSTPVKIGGFGGAVQQVAAGGLHSMALAGGTVW
AWGSNSAGQLALNPISSATRFAPRQVETAKLPIAPTAIVAGGSHSIAYTSTEAYAWGNNASGQLGNGTTLSNHMPQKVQL
PSSITIRKISAGGSHNLALDSTGAIWAWGSNAYGQLGNGTTTNQSTPVQLTLPAGVTGFIDVFAGPSHSVAVASNFTVYT
WGFNTLGLLSVGTTGDQLSPAQVRDASNVPFTDVERVVLLGSFFTIVKKNGSGGMWAWGYNGYGQLGDGTTSNRTAPVQV
ALP

Sequences:

>Translated_403_residues
MKNIINFRMAAVLASCTLLSACADGDLPYSDSTSISSPAYSHSAVFQNMTTLAVWGNNESGQLGDGTTTSAATPKRLRLG
FATYSSGFATGASHTLAIARFDNVSGVRAWGSNSAGQIGRDPATVPTSSTPVKIGGFGGAVQQVAAGGLHSMALAGGTVW
AWGSNSAGQLALNPISSATRFAPRQVETAKLPIAPTAIVAGGSHSIAYTSTEAYAWGNNASGQLGNGTTLSNHMPQKVQL
PSSITIRKISAGGSHNLALDSTGAIWAWGSNAYGQLGNGTTTNQSTPVQLTLPAGVTGFIDVFAGPSHSVAVASNFTVYT
WGFNTLGLLSVGTTGDQLSPAQVRDASNVPFTDVERVVLLGSFFTIVKKNGSGGMWAWGYNGYGQLGDGTTSNRTAPVQV
ALP
>Mature_403_residues
MKNIINFRMAAVLASCTLLSACADGDLPYSDSTSISSPAYSHSAVFQNMTTLAVWGNNESGQLGDGTTTSAATPKRLRLG
FATYSSGFATGASHTLAIARFDNVSGVRAWGSNSAGQIGRDPATVPTSSTPVKIGGFGGAVQQVAAGGLHSMALAGGTVW
AWGSNSAGQLALNPISSATRFAPRQVETAKLPIAPTAIVAGGSHSIAYTSTEAYAWGNNASGQLGNGTTLSNHMPQKVQL
PSSITIRKISAGGSHNLALDSTGAIWAWGSNAYGQLGNGTTTNQSTPVQLTLPAGVTGFIDVFAGPSHSVAVASNFTVYT
WGFNTLGLLSVGTTGDQLSPAQVRDASNVPFTDVERVVLLGSFFTIVKKNGSGGMWAWGYNGYGQLGDGTTSNRTAPVQV
ALP

Specific function: Unknown

COG id: COG5184

COG function: function code DZ; Alpha-tubulin suppressor and related RCC1 domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI63025188, Length=356, Percent_Identity=28.3707865168539, Blast_Score=129, Evalue=7e-30,
Organism=Homo sapiens, GI37620181, Length=356, Percent_Identity=28.3707865168539, Blast_Score=128, Evalue=8e-30,
Organism=Homo sapiens, GI4557445, Length=246, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI57242759, Length=194, Percent_Identity=35.5670103092784, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI7657152, Length=353, Percent_Identity=28.0453257790368, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI126032348, Length=358, Percent_Identity=27.9329608938547, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI126131099, Length=254, Percent_Identity=31.8897637795276, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI110825982, Length=339, Percent_Identity=29.4985250737463, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI259089405, Length=277, Percent_Identity=29.6028880866426, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI61563742, Length=277, Percent_Identity=29.6028880866426, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI6912330, Length=334, Percent_Identity=29.0419161676647, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI78190492, Length=306, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI4506581, Length=311, Percent_Identity=27.9742765273312, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI222136641, Length=315, Percent_Identity=26.3492063492064, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI30039692, Length=271, Percent_Identity=28.0442804428044, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI209969703, Length=222, Percent_Identity=27.4774774774775, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI29789090, Length=222, Percent_Identity=27.4774774774775, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI13540582, Length=308, Percent_Identity=26.6233766233766, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI63054860, Length=205, Percent_Identity=28.2926829268293, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI63054858, Length=205, Percent_Identity=28.2926829268293, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI4502801, Length=397, Percent_Identity=25.6926952141058, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI114796642, Length=397, Percent_Identity=25.6926952141058, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI114796646, Length=333, Percent_Identity=26.1261261261261, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI114796644, Length=333, Percent_Identity=26.1261261261261, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI169170558, Length=278, Percent_Identity=26.978417266187, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI169171160, Length=278, Percent_Identity=26.978417266187, Blast_Score=67, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17510153, Length=283, Percent_Identity=30.0353356890459, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71988539, Length=354, Percent_Identity=27.4011299435028, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI193203348, Length=357, Percent_Identity=26.3305322128852, Blast_Score=69, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6321341, Length=415, Percent_Identity=25.5421686746988, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24655113, Length=304, Percent_Identity=32.2368421052632, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24655115, Length=304, Percent_Identity=32.2368421052632, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI281361147, Length=321, Percent_Identity=26.791277258567, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24580714, Length=419, Percent_Identity=26.2529832935561, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24658888, Length=265, Percent_Identity=28.6792452830189, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24658881, Length=265, Percent_Identity=28.6792452830189, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI18859625, Length=265, Percent_Identity=28.6792452830189, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24582121, Length=256, Percent_Identity=27.34375, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI20129257, Length=256, Percent_Identity=27.34375, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45552000, Length=255, Percent_Identity=25.8823529411765, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649791, Length=176, Percent_Identity=26.1363636363636, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41215; Mature: 41215

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00626 RCC1_2 ; PS50012 RCC1_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIINFRMAAVLASCTLLSACADGDLPYSDSTSISSPAYSHSAVFQNMTTLAVWGNNES
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEECCCC
GQLGDGTTTSAATPKRLRLGFATYSSGFATGASHTLAIARFDNVSGVRAWGSNSAGQIGR
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCC
DPATVPTSSTPVKIGGFGGAVQQVAAGGLHSMALAGGTVWAWGSNSAGQLALNPISSATR
CCCCCCCCCCCEEECCCCHHHHHHHHCCHHHHEECCCEEEEECCCCCCEEEECCCCHHHH
FAPRQVETAKLPIAPTAIVAGGSHSIAYTSTEAYAWGNNASGQLGNGTTLSNHMPQKVQL
CCCCCCCEEECCCCCEEEEECCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEEEC
PSSITIRKISAGGSHNLALDSTGAIWAWGSNAYGQLGNGTTTNQSTPVQLTLPAGVTGFI
CCCEEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEH
DVFAGPSHSVAVASNFTVYTWGFNTLGLLSVGTTGDQLSPAQVRDASNVPFTDVERVVLL
EEECCCCCCEEEECCCEEEEECCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHH
GSFFTIVKKNGSGGMWAWGYNGYGQLGDGTTSNRTAPVQVALP
HCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MKNIINFRMAAVLASCTLLSACADGDLPYSDSTSISSPAYSHSAVFQNMTTLAVWGNNES
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEECCCC
GQLGDGTTTSAATPKRLRLGFATYSSGFATGASHTLAIARFDNVSGVRAWGSNSAGQIGR
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCC
DPATVPTSSTPVKIGGFGGAVQQVAAGGLHSMALAGGTVWAWGSNSAGQLALNPISSATR
CCCCCCCCCCCEEECCCCHHHHHHHHCCHHHHEECCCEEEEECCCCCCEEEECCCCHHHH
FAPRQVETAKLPIAPTAIVAGGSHSIAYTSTEAYAWGNNASGQLGNGTTLSNHMPQKVQL
CCCCCCCEEECCCCCEEEEECCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEEEC
PSSITIRKISAGGSHNLALDSTGAIWAWGSNAYGQLGNGTTTNQSTPVQLTLPAGVTGFI
CCCEEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEH
DVFAGPSHSVAVASNFTVYTWGFNTLGLLSVGTTGDQLSPAQVRDASNVPFTDVERVVLL
EEECCCCCCEEEECCCEEEEECCCCEEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHH
GSFFTIVKKNGSGGMWAWGYNGYGQLGDGTTSNRTAPVQVALP
HCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA