Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 39997342

GI number: 39997342

Start: 2458998

End: 2459972

Strand: Reverse

Name: yibD [C]

Synonym: GSU2244

Alternate gene names: 39997342

Gene position: 2459972-2458998 (Counterclockwise)

Preceding gene: 39997343

Following gene: 308513313

Centisome position: 64.5

GC content: 46.05

Gene sequence:

>975_bases
GTGCAAATGATGGAGCAATTTTATCCAAAGGTGTCTATAGTCATACCTGTATATAATGGCTCTGACTACATGCGTGAGGC
TATAGATAGTGCGCTTGGCCAAACATACGGTAACATTGAGGTAATAGTAGTTAATGACGGGTCTAGTGATGGAGGATTGA
CTCACGAAATAGCCTTGTCATACGGTGGAAACATTAGATATTTTGCCAAAGAGAACGGCGGTGTCGCTTCAGCCCTCAAT
TTTGCAATACGGATGATGGATGGAGAGTATTTTTCATGGCTGAGTCACGATGATATCTATTATCCCAATAAGATCGAAAC
TCAAATAGGTTACCTTGCCGAGCATGACAGGAATGCCATACTTTACAGTGATTTTGAGTTGATAGATTGCCTTTCGAAGG
TGATCAAGCCCGTTAATGCGGGTGAAATACCGCCTGAGCAATTTCTGTATAACCTGATTACAATCGGACATCTGAATGGT
TGCACATTGTTGGTGCCAAAGAGATGTTTTGAAGAAACCGGCTTTTTTGACGAATCGCTGAGGTCGACTCAAGACTACGC
ACTTTGGTTCACCTTTGCCCAGAAGTACCGGTTCGAGCAGATACGAAAAGTTCTGGTGAAATATCGGACACATTCCAACC
AGGGATCATATGTAATTCCCACTCACTCCCAAGAGGTCAACGACCTGCACATATGGTTTCTTGAGGAAGCCTCAGAAAGG
GGGCTCCTGCCGATACCCGATGAGGGCGCCTCGCGATTCTTTCTGGAAGTGGCCGGCATCTACAAGAAGCGCGGTATATA
CCGTGCGGCCGATTATTCGTGCAGCATGGCTCTGCGCCACATGCGCGACGAAGGAGGACTCGCTCTCTTGAGAGAGTTGC
CACGCGTAGCATACTTGAAATACTATTTCAGAAAGAAGCAATTCAAAAGTTATCTGAGAGAGCTTCGTCGATCAACTGTG
AGGCGCTCCTTGTGA

Upstream 100 bases:

>100_bases
GACCGTTCAGAATTGTTCAAGACTATGACGTTGACAACGTTTCCATGAAAGTTGTGAGGATCATTTTTAGTTACGTTGAC
TACATTAACAGGACGATATG

Downstream 100 bases:

>100_bases
ATACAGTAATAAACGTAATGACCATTTTTGGAACCCGCCCCGAAGCCATCAAGATGGCGCCGGTGGTGCGGGAGCTCCAG
CGCCGGCCGGACCGGTTCCG

Product: glycosyl transferase, group 2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MQMMEQFYPKVSIVIPVYNGSDYMREAIDSALGQTYGNIEVIVVNDGSSDGGLTHEIALSYGGNIRYFAKENGGVASALN
FAIRMMDGEYFSWLSHDDIYYPNKIETQIGYLAEHDRNAILYSDFELIDCLSKVIKPVNAGEIPPEQFLYNLITIGHLNG
CTLLVPKRCFEETGFFDESLRSTQDYALWFTFAQKYRFEQIRKVLVKYRTHSNQGSYVIPTHSQEVNDLHIWFLEEASER
GLLPIPDEGASRFFLEVAGIYKKRGIYRAADYSCSMALRHMRDEGGLALLRELPRVAYLKYYFRKKQFKSYLRELRRSTV
RRSL

Sequences:

>Translated_324_residues
MQMMEQFYPKVSIVIPVYNGSDYMREAIDSALGQTYGNIEVIVVNDGSSDGGLTHEIALSYGGNIRYFAKENGGVASALN
FAIRMMDGEYFSWLSHDDIYYPNKIETQIGYLAEHDRNAILYSDFELIDCLSKVIKPVNAGEIPPEQFLYNLITIGHLNG
CTLLVPKRCFEETGFFDESLRSTQDYALWFTFAQKYRFEQIRKVLVKYRTHSNQGSYVIPTHSQEVNDLHIWFLEEASER
GLLPIPDEGASRFFLEVAGIYKKRGIYRAADYSCSMALRHMRDEGGLALLRELPRVAYLKYYFRKKQFKSYLRELRRSTV
RRSL
>Mature_324_residues
MQMMEQFYPKVSIVIPVYNGSDYMREAIDSALGQTYGNIEVIVVNDGSSDGGLTHEIALSYGGNIRYFAKENGGVASALN
FAIRMMDGEYFSWLSHDDIYYPNKIETQIGYLAEHDRNAILYSDFELIDCLSKVIKPVNAGEIPPEQFLYNLITIGHLNG
CTLLVPKRCFEETGFFDESLRSTQDYALWFTFAQKYRFEQIRKVLVKYRTHSNQGSYVIPTHSQEVNDLHIWFLEEASER
GLLPIPDEGASRFFLEVAGIYKKRGIYRAADYSCSMALRHMRDEGGLALLRELPRVAYLKYYFRKKQFKSYLRELRRSTV
RRSL

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=110, Percent_Identity=35.4545454545455, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788372, Length=224, Percent_Identity=24.5535714285714, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 37452; Mature: 37452

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMMEQFYPKVSIVIPVYNGSDYMREAIDSALGQTYGNIEVIVVNDGSSDGGLTHEIALS
CCCHHHHCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEE
YGGNIRYFAKENGGVASALNFAIRMMDGEYFSWLSHDDIYYPNKIETQIGYLAEHDRNAI
ECCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEE
LYSDFELIDCLSKVIKPVNAGEIPPEQFLYNLITIGHLNGCTLLVPKRCFEETGFFDESL
EECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCHHHHH
RSTQDYALWFTFAQKYRFEQIRKVLVKYRTHSNQGSYVIPTHSQEVNDLHIWFLEEASER
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEECCCCC
GLLPIPDEGASRFFLEVAGIYKKRGIYRAADYSCSMALRHMRDEGGLALLRELPRVAYLK
CCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCHHHHHHCHHHHHHH
YYFRKKQFKSYLRELRRSTVRRSL
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQMMEQFYPKVSIVIPVYNGSDYMREAIDSALGQTYGNIEVIVVNDGSSDGGLTHEIALS
CCCHHHHCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEE
YGGNIRYFAKENGGVASALNFAIRMMDGEYFSWLSHDDIYYPNKIETQIGYLAEHDRNAI
ECCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEE
LYSDFELIDCLSKVIKPVNAGEIPPEQFLYNLITIGHLNGCTLLVPKRCFEETGFFDESL
EECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCHHHHH
RSTQDYALWFTFAQKYRFEQIRKVLVKYRTHSNQGSYVIPTHSQEVNDLHIWFLEEASER
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEEECCCCC
GLLPIPDEGASRFFLEVAGIYKKRGIYRAADYSCSMALRHMRDEGGLALLRELPRVAYLK
CCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCHHHHHHCHHHHHHH
YYFRKKQFKSYLRELRRSTVRRSL
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]