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The map label for this gene is rcoM2 [H]

Identifier: 39997197

GI number: 39997197

Start: 2307645

End: 2308343

Strand: Reverse

Name: rcoM2 [H]

Synonym: GSU2099

Alternate gene names: 39997197

Gene position: 2308343-2307645 (Counterclockwise)

Preceding gene: 39997199

Following gene: 39997196

Centisome position: 60.52

GC content: 61.37

Gene sequence:

>699_bases
ATGAACCGCATCCTCTCCATGATCGAACAGATGGAACCGGGGGTCGTGATCTTCAACGACGACCTGACCATTTCCTCCGT
CAGCAGCATGGTGTTCATGATTTTCGGGCATATCCCCCGTGAGCGCATCTTTGCGGGGGATCTCCTGGATATCCACGACG
AGGCGGCGCGGGAAAAGGTGAAGGAGACCCTGCGGCTGGCCCGCCAGGCGCAGCGGCACATCCCTCTTTCCCTCAAGTTC
ATCACCAGCGAGGGGCACGACCGCTACCTCCTCGTCAAGCTGATCACCGTGGCGGAGCGGGACCCCGCCAGCGAAAAGAT
CTGCGCCCTGTTTTACGACATCACCCCCTTCATCGTTGCCGAGCGAAAGCTCACGCGGGTGCCGGTCACTTCCCGCGGCG
ACATCCACCTGCTCAGGCCTGAGGAGATCGTCTACCTGAAGGCGGACAATATCTACTCCCTCATCTATACCGAAGCGGGC
GAATTCCACAGCGACCTGTCCCTGGGGGCCATGGAAAAACGGCTCTCCGAGGACATCTTCTACCGCATCCACCGCAGCTA
CCTGGTCAACCTCGCCAAGGTCAGGAAAGTCCACCGGGAAAGCAGCGAGTGCACCGTCGCGGCGGGTGGGGGCGAAGTCC
GCCTCCCGGTGAGCCGCGACAAGATGCAGCGCTTCCTGACGGATCTCGGCCTGAAGTAG

Upstream 100 bases:

>100_bases
GCCTTGGGCGGGGCCACGCCGCGCGGGGAGGAATTGACTCGACCCCGCGGCCGATGATATACCTCTCGGAACCCTGCAGC
CGTCGAGGAGCAGCATCGCC

Downstream 100 bases:

>100_bases
CGCCGGCGGTTCACTCCCCGTTTCCCACCGTTCACAAGTCCCAGACACCTTCCGCAAGTGTCGGCTGGCATTTCATGGTC
ACTTCGGCTACAGGTAGGAA

Product: sensory box protein

Products: NA

Alternate protein names: Regulator of CO metabolism 2; RCOM-2 [H]

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MNRILSMIEQMEPGVVIFNDDLTISSVSSMVFMIFGHIPRERIFAGDLLDIHDEAAREKVKETLRLARQAQRHIPLSLKF
ITSEGHDRYLLVKLITVAERDPASEKICALFYDITPFIVAERKLTRVPVTSRGDIHLLRPEEIVYLKADNIYSLIYTEAG
EFHSDLSLGAMEKRLSEDIFYRIHRSYLVNLAKVRKVHRESSECTVAAGGGEVRLPVSRDKMQRFLTDLGLK

Sequences:

>Translated_232_residues
MNRILSMIEQMEPGVVIFNDDLTISSVSSMVFMIFGHIPRERIFAGDLLDIHDEAAREKVKETLRLARQAQRHIPLSLKF
ITSEGHDRYLLVKLITVAERDPASEKICALFYDITPFIVAERKLTRVPVTSRGDIHLLRPEEIVYLKADNIYSLIYTEAG
EFHSDLSLGAMEKRLSEDIFYRIHRSYLVNLAKVRKVHRESSECTVAAGGGEVRLPVSRDKMQRFLTDLGLK
>Mature_232_residues
MNRILSMIEQMEPGVVIFNDDLTISSVSSMVFMIFGHIPRERIFAGDLLDIHDEAAREKVKETLRLARQAQRHIPLSLKF
ITSEGHDRYLLVKLITVAERDPASEKICALFYDITPFIVAERKLTRVPVTSRGDIHLLRPEEIVYLKADNIYSLIYTEAG
EFHSDLSLGAMEKRLSEDIFYRIHRSYLVNLAKVRKVHRESSECTVAAGGGEVRLPVSRDKMQRFLTDLGLK

Specific function: One-component, b-type heme-containing aerobic sensor and transcriptional regulator that responds to CO by activating the expression of the oxidation operon cox [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007492 [H]

Pfam domain/function: PF04397 LytTR [H]

EC number: NA

Molecular weight: Translated: 26558; Mature: 26558

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS50112 PAS ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRILSMIEQMEPGVVIFNDDLTISSVSSMVFMIFGHIPRERIFAGDLLDIHDEAAREKV
CHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHH
KETLRLARQAQRHIPLSLKFITSEGHDRYLLVKLITVAERDPASEKICALFYDITPFIVA
HHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHCCHHHHH
ERKLTRVPVTSRGDIHLLRPEEIVYLKADNIYSLIYTEAGEFHSDLSLGAMEKRLSEDIF
CCHHEECCCCCCCCEEEECCCEEEEEECCCEEEEEEECCCCHHCCCHHHHHHHHHHHHHH
YRIHRSYLVNLAKVRKVHRESSECTVAAGGGEVRLPVSRDKMQRFLTDLGLK
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRILSMIEQMEPGVVIFNDDLTISSVSSMVFMIFGHIPRERIFAGDLLDIHDEAAREKV
CHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHH
KETLRLARQAQRHIPLSLKFITSEGHDRYLLVKLITVAERDPASEKICALFYDITPFIVA
HHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHCCHHHHH
ERKLTRVPVTSRGDIHLLRPEEIVYLKADNIYSLIYTEAGEFHSDLSLGAMEKRLSEDIF
CCHHEECCCCCCCCEEEECCCEEEEEECCCEEEEEEECCCCHHCCCHHHHHHHHHHHHHH
YRIHRSYLVNLAKVRKVHRESSECTVAAGGGEVRLPVSRDKMQRFLTDLGLK
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA