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The map label for this gene is yccZ [C]

Identifier: 39997083

GI number: 39997083

Start: 2176355

End: 2177203

Strand: Reverse

Name: yccZ [C]

Synonym: GSU1985

Alternate gene names: 39997083

Gene position: 2177203-2176355 (Counterclockwise)

Preceding gene: 39997084

Following gene: 39997082

Centisome position: 57.08

GC content: 58.07

Gene sequence:

>849_bases
ATGCGATTGAAATTTCTGATCTGTGCCCTGTCCCTGCTGTTGCCGATGCTCGCGTGGAGCGCGGACTATGTCATCGGCGA
AGGGGACGGTCTCGATATCTCCGTCTGGGGAGTGAAAGAGCTCAATGTCGGAGTCAAGGTCCGACCCGACGGGAAGATCA
CCATCCCCGGCCTGGGAGATGTGGTGGCAAGCGGCTTTACCCCGGCCCAGCTGCAGGCTGATCTGGCGCATCGGCTCAAA
GAACTGGTGAAGAACCCCATAGTGACAGTTACGGTACGAGAGATAACCAACAGCAAGGTCTACATTTTCGGTGGCGGCGT
GCAGTCCGGTGTGGTTGACCTGAACCGCCGCACCACGCTGCTCCAGTTACTCTGCTCCATCGGAAACGTCGGTGCCGGCG
ACGGCAAGGGGGGCGGTTCCGCTGCCGGTCCTTCCACCAAGGTGGCCGACTACCGCAAGGCCTACGTTCTGCGCAACGGC
AAAAAAGTGAAGGAGGATTTCTACCGGCTCTTTATAACCGGCGATACGAGCGAAGATATCGTCATCGAGTCCGGCGACGC
CATCTTCATCCCGCAGGCACAGGAAAAGAACGTGTACGTCCTCGGCGCTGTCACCAATCCCCGCTTCATCGAATACCGCG
AGGGGATGACCGTCATGGAGGCCATTCTCGAATCGGGCGGTTTCACCAAATTCGCCCGCCAGAACGATACGGTGATCCGC
AGAAGGGACGGCGACAAAGAGGCACTTATCGAGGTGAAGGCCAAGGATCTGGTCAAGGACGGCGACCTGAGCCAGAACGT
AAAGCTCAGCCCGGGAGATTACATCATCGTTAAGGAAGGGATGTTCTGA

Upstream 100 bases:

>100_bases
AGTTGCCTTTGATATAATGATTATCTTTGAAACCGTGAAGGTCGTACTGTTCCAGCGGGGGGGGAGGTAAATCCCCTGGG
GACATCCTAAAGGAGATGCG

Downstream 100 bases:

>100_bases
TGCAGCAGTCCGAATTCGACTACCGGCACTATCTCACGCTTATCGTCGCCCGTAAGCGCCTTTTTGTCGTGGTGGCCCTC
GCGGTCATGGCTGCCGCAGT

Product: outer membrane protein

Products: NA

Alternate protein names: ORF4 [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MRLKFLICALSLLLPMLAWSADYVIGEGDGLDISVWGVKELNVGVKVRPDGKITIPGLGDVVASGFTPAQLQADLAHRLK
ELVKNPIVTVTVREITNSKVYIFGGGVQSGVVDLNRRTTLLQLLCSIGNVGAGDGKGGGSAAGPSTKVADYRKAYVLRNG
KKVKEDFYRLFITGDTSEDIVIESGDAIFIPQAQEKNVYVLGAVTNPRFIEYREGMTVMEAILESGGFTKFARQNDTVIR
RRDGDKEALIEVKAKDLVKDGDLSQNVKLSPGDYIIVKEGMF

Sequences:

>Translated_282_residues
MRLKFLICALSLLLPMLAWSADYVIGEGDGLDISVWGVKELNVGVKVRPDGKITIPGLGDVVASGFTPAQLQADLAHRLK
ELVKNPIVTVTVREITNSKVYIFGGGVQSGVVDLNRRTTLLQLLCSIGNVGAGDGKGGGSAAGPSTKVADYRKAYVLRNG
KKVKEDFYRLFITGDTSEDIVIESGDAIFIPQAQEKNVYVLGAVTNPRFIEYREGMTVMEAILESGGFTKFARQNDTVIR
RRDGDKEALIEVKAKDLVKDGDLSQNVKLSPGDYIIVKEGMF
>Mature_282_residues
MRLKFLICALSLLLPMLAWSADYVIGEGDGLDISVWGVKELNVGVKVRPDGKITIPGLGDVVASGFTPAQLQADLAHRLK
ELVKNPIVTVTVREITNSKVYIFGGGVQSGVVDLNRRTTLLQLLCSIGNVGAGDGKGGGSAAGPSTKVADYRKAYVLRNG
KKVKEDFYRLFITGDTSEDIVIESGDAIFIPQAQEKNVYVLGAVTNPRFIEYREGMTVMEAILESGGFTKFARQNDTVIR
RRDGDKEALIEVKAKDLVKDGDLSQNVKLSPGDYIIVKEGMF

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=221, Percent_Identity=28.9592760180996, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788376, Length=218, Percent_Identity=27.5229357798165, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 30584; Mature: 30584

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKFLICALSLLLPMLAWSADYVIGEGDGLDISVWGVKELNVGVKVRPDGKITIPGLGD
CCHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEECCCEEECCCCCEECCCCHH
VVASGFTPAQLQADLAHRLKELVKNPIVTVTVREITNSKVYIFGGGVQSGVVDLNRRTTL
HHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEECCCCCCEEECCCHHHH
LQLLCSIGNVGAGDGKGGGSAAGPSTKVADYRKAYVLRNGKKVKEDFYRLFITGDTSEDI
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCHHCCCEEEEEEECCCCCCE
VIESGDAIFIPQAQEKNVYVLGAVTNPRFIEYREGMTVMEAILESGGFTKFARQNDTVIR
EEECCCEEEECCCCCCCEEEEEEECCCCEEEECCCHHHHHHHHHCCCCEEECCCCCCEEE
RRDGDKEALIEVKAKDLVKDGDLSQNVKLSPGDYIIVKEGMF
ECCCCHHHEEEEHHHHHHCCCCCCCCEEECCCCEEEEECCCC
>Mature Secondary Structure
MRLKFLICALSLLLPMLAWSADYVIGEGDGLDISVWGVKELNVGVKVRPDGKITIPGLGD
CCHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEECCCEEECCCCCEECCCCHH
VVASGFTPAQLQADLAHRLKELVKNPIVTVTVREITNSKVYIFGGGVQSGVVDLNRRTTL
HHHCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEECCCCCCEEECCCHHHH
LQLLCSIGNVGAGDGKGGGSAAGPSTKVADYRKAYVLRNGKKVKEDFYRLFITGDTSEDI
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCHHCCCEEEEEEECCCCCCE
VIESGDAIFIPQAQEKNVYVLGAVTNPRFIEYREGMTVMEAILESGGFTKFARQNDTVIR
EEECCCEEEECCCCCCCEEEEEEECCCCEEEECCCHHHHHHHHHCCCCEEECCCCCCEEE
RRDGDKEALIEVKAKDLVKDGDLSQNVKLSPGDYIIVKEGMF
ECCCCHHHEEEEHHHHHHCCCCCCCCEEECCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896702 [H]