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The map label for this gene is yciR [C]

Identifier: 39997025

GI number: 39997025

Start: 2105212

End: 2107194

Strand: Reverse

Name: yciR [C]

Synonym: GSU1927

Alternate gene names: 39997025

Gene position: 2107194-2105212 (Counterclockwise)

Preceding gene: 39997026

Following gene: 39997023

Centisome position: 55.25

GC content: 60.72

Gene sequence:

>1983_bases
ATGTTCAGCCGGCTTGTTCCCGACATCATCCTGCTCGATGTAGTAATGCCCGGCATGGGGGGATTTGATGTCTGCCGGCG
TATTCGCCGTCTGCCGGGAGGAGACCGCGTCCAGATCCTCGTTATGACGAGTCTCGATGATACCGGTGCCATTGATGAAG
CCTACGAGGCAGGGGCTTCGGACTTCCTGGCCAAGCCGATCGACTGGGTTCTGCTGCCCCGCCGTATCCGTTATCTACTG
CGCGCCAAACTCGCTTTCGATGAGCTTCACAAGAGCAGGACCATGCTGTACAACGCTCAACGCATTGCTCGCCTGGGAAA
CTGGGAGTTCGACCTGGAGACCAACGTCTTTACCTGCTCCGAGGAATCGTGCCGCATTTTCGGCATCAGGGACCATCGGC
AGGGGAAGAGTCACCGGGCCCTGATGCGCCGGGTGCATCCCGAAGACCGGGTAACGGTCAAGAAGGCCATCTTTCAGGCG
TTCCGGACCGGTGTCGGCTACTGCATGGATCACCGGATCGTTCTCGATGATGGTGTTGAGCGGATCGTCAGCCAGCATGC
CGAGCTTCTGTCCGCAGATGACGGGCGGACGTCAAGGCTGGTCGGAACGGTCCACGACATAACCGAGCGAACCCTTGCCG
AGGAGCGGATTCGCTACCTTGCCCATCACGATACTCTGACGGCACTGCCCAACCGGTTCCAGTTCGAGGAGCGAATGGAA
CAGGCCCTGGCCTTTGCCCAGCGCAACGGCTTCATGATGGCAGTCCTGTTCCTGGATCTCGACCACTTCAAAAAGGTGAA
CGATACTCTGGGGCATCATGCGGGCGACCGGCTGCTTCAGGAGGCGGCCGGCCGGCTTATGAAATGCCTGCGGCGCAGCG
ATACGCTCACCCACGCTTCCCGCGAGGATGCGAGCCCCTTCATCTCCCGCATGGGCGGGGACGAGTTCACCATTCTGCTG
ACCGATCTGGCCCACCCCCAGGATGCCGCCAGGGTCTCGCAACGCATCATCACCGCCCTGTCCAAGCGTTATGTGATCGG
CGGCCACGAGGTTTTCGTGGGGGCAAGCATCGGCATCAGTCTCTTTCCCTCCGACGGCGAGGACTGCGATCAGCTTTTGC
GTAACGCGGATACGGCCATGTATCACGCCAAAGAACTGGGCCGCAATACCTATCAGTACTATTCGGGCTCTATGAACGCC
ATGGCGCTCGAGCGGCTGACCCTGGAAAACAACCTGCGCTGGGCGCTCAAACGGAATGAATTCCGCCTCTGCTACCAACC
ACAGCTGGATGCGGCCTCGGGGCGCGTGGTGGGGATGGAGGCTCTGCTGAGCTGGCATCGGCCGGGGTGTGATGTAGTCC
CGCCTGACGATTTCATCCCCTTGGCCGAGGAAACCGGCCTTATCGCATCGATTGGCGAGTGGGTCCTCTGGAACGCTTGT
GCCCAGGCGGTTACCTGGCTCCACGAGGGGCTCCCGCCGGTACGGGTGGCGGTCAATCTTTCCAGCCTCCAATTCCGGTC
GCGTCGTTTGGCCGAGTTGGTGAGGAAGGTGCTGCGCGCCACCGGGTTGCCGCCATCGCATCTGGAGCTGGAGATTACCG
AGGGGGTCTTCATGTCCAACGAAGAGGATGCTGCTGTTGTCATTCGCGACCTAAAGAAGATGGGGGTCCGCTTTTCCGTC
GACGATTTCGGCACCGGCTACTCTTCCCTCAGCAGGCTGTCGCGCTTCCCGCTCGATGCTCTCAAGATCGACCGCTCCTT
TGTCCGTGACATTTCAGCCGATCCGGCCGCGGCGGGCCTCACAGCCGCCATTATTGCCATGGCCCGCAATCTCGGCCTGA
ATGTTATTGCCGAAGGGGTCGAAACCCATGAACAGTTTGCCTTTCTCCGGGCAAACGGCTGCGCCGAAGTACAGGGATTC
CTCTTCAGTCAGCCGCTTAACCCTGATGCAGCCGCAGCGTTCCTGCGCGCTCGGTCGCGCTAG

Upstream 100 bases:

>100_bases
CATTGACGACGATGAGCTGGTGCGCGTTCTTGCCCGGCGCGCAGTAGAGCAGGGGGGCTTCGCGGTGATTGAAGCCGGCG
ATGGCGTCACCGCCATTGAG

Downstream 100 bases:

>100_bases
GATGCTCCGTCACTCTTTTGCCACGGGCTTCCTCCTTCGCGGGATGAGCATCGGCACCTGGCGCCGGTAGCTGCGATAGG
CGTCACCGAATTCCCTTTCG

Product: sensory box/response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 660; Mature: 660

Protein sequence:

>660_residues
MFSRLVPDIILLDVVMPGMGGFDVCRRIRRLPGGDRVQILVMTSLDDTGAIDEAYEAGASDFLAKPIDWVLLPRRIRYLL
RAKLAFDELHKSRTMLYNAQRIARLGNWEFDLETNVFTCSEESCRIFGIRDHRQGKSHRALMRRVHPEDRVTVKKAIFQA
FRTGVGYCMDHRIVLDDGVERIVSQHAELLSADDGRTSRLVGTVHDITERTLAEERIRYLAHHDTLTALPNRFQFEERME
QALAFAQRNGFMMAVLFLDLDHFKKVNDTLGHHAGDRLLQEAAGRLMKCLRRSDTLTHASREDASPFISRMGGDEFTILL
TDLAHPQDAARVSQRIITALSKRYVIGGHEVFVGASIGISLFPSDGEDCDQLLRNADTAMYHAKELGRNTYQYYSGSMNA
MALERLTLENNLRWALKRNEFRLCYQPQLDAASGRVVGMEALLSWHRPGCDVVPPDDFIPLAEETGLIASIGEWVLWNAC
AQAVTWLHEGLPPVRVAVNLSSLQFRSRRLAELVRKVLRATGLPPSHLELEITEGVFMSNEEDAAVVIRDLKKMGVRFSV
DDFGTGYSSLSRLSRFPLDALKIDRSFVRDISADPAAAGLTAAIIAMARNLGLNVIAEGVETHEQFAFLRANGCAEVQGF
LFSQPLNPDAAAAFLRARSR

Sequences:

>Translated_660_residues
MFSRLVPDIILLDVVMPGMGGFDVCRRIRRLPGGDRVQILVMTSLDDTGAIDEAYEAGASDFLAKPIDWVLLPRRIRYLL
RAKLAFDELHKSRTMLYNAQRIARLGNWEFDLETNVFTCSEESCRIFGIRDHRQGKSHRALMRRVHPEDRVTVKKAIFQA
FRTGVGYCMDHRIVLDDGVERIVSQHAELLSADDGRTSRLVGTVHDITERTLAEERIRYLAHHDTLTALPNRFQFEERME
QALAFAQRNGFMMAVLFLDLDHFKKVNDTLGHHAGDRLLQEAAGRLMKCLRRSDTLTHASREDASPFISRMGGDEFTILL
TDLAHPQDAARVSQRIITALSKRYVIGGHEVFVGASIGISLFPSDGEDCDQLLRNADTAMYHAKELGRNTYQYYSGSMNA
MALERLTLENNLRWALKRNEFRLCYQPQLDAASGRVVGMEALLSWHRPGCDVVPPDDFIPLAEETGLIASIGEWVLWNAC
AQAVTWLHEGLPPVRVAVNLSSLQFRSRRLAELVRKVLRATGLPPSHLELEITEGVFMSNEEDAAVVIRDLKKMGVRFSV
DDFGTGYSSLSRLSRFPLDALKIDRSFVRDISADPAAAGLTAAIIAMARNLGLNVIAEGVETHEQFAFLRANGCAEVQGF
LFSQPLNPDAAAAFLRARSR
>Mature_660_residues
MFSRLVPDIILLDVVMPGMGGFDVCRRIRRLPGGDRVQILVMTSLDDTGAIDEAYEAGASDFLAKPIDWVLLPRRIRYLL
RAKLAFDELHKSRTMLYNAQRIARLGNWEFDLETNVFTCSEESCRIFGIRDHRQGKSHRALMRRVHPEDRVTVKKAIFQA
FRTGVGYCMDHRIVLDDGVERIVSQHAELLSADDGRTSRLVGTVHDITERTLAEERIRYLAHHDTLTALPNRFQFEERME
QALAFAQRNGFMMAVLFLDLDHFKKVNDTLGHHAGDRLLQEAAGRLMKCLRRSDTLTHASREDASPFISRMGGDEFTILL
TDLAHPQDAARVSQRIITALSKRYVIGGHEVFVGASIGISLFPSDGEDCDQLLRNADTAMYHAKELGRNTYQYYSGSMNA
MALERLTLENNLRWALKRNEFRLCYQPQLDAASGRVVGMEALLSWHRPGCDVVPPDDFIPLAEETGLIASIGEWVLWNAC
AQAVTWLHEGLPPVRVAVNLSSLQFRSRRLAELVRKVLRATGLPPSHLELEITEGVFMSNEEDAAVVIRDLKKMGVRFSV
DDFGTGYSSLSRLSRFPLDALKIDRSFVRDISADPAAAGLTAAIIAMARNLGLNVIAEGVETHEQFAFLRANGCAEVQGF
LFSQPLNPDAAAAFLRARSR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=500, Percent_Identity=38.8, Blast_Score=336, Evalue=3e-93,
Organism=Escherichia coli, GI87081921, Length=480, Percent_Identity=33.9583333333333, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI226510982, Length=423, Percent_Identity=31.4420803782506, Blast_Score=195, Evalue=6e-51,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=32.6530612244898, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=36.3265306122449, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1786507, Length=261, Percent_Identity=32.183908045977, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI87081743, Length=232, Percent_Identity=34.9137931034483, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=34.412955465587, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=32.7800829875519, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1788381, Length=440, Percent_Identity=27.7272727272727, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1787055, Length=245, Percent_Identity=31.4285714285714, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1788849, Length=251, Percent_Identity=32.6693227091633, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=32.2314049586777, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI145693134, Length=191, Percent_Identity=32.9842931937173, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI87081881, Length=194, Percent_Identity=35.5670103092784, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI87082007, Length=186, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=34.0909090909091, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1786584, Length=193, Percent_Identity=29.0155440414508, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=30.9941520467836, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1787410, Length=127, Percent_Identity=31.496062992126, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=32.5443786982249, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=34.3195266272189, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI87081974, Length=113, Percent_Identity=34.5132743362832, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 74065; Mature: 74065

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSRLVPDIILLDVVMPGMGGFDVCRRIRRLPGGDRVQILVMTSLDDTGAIDEAYEAGAS
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHCCCH
DFLAKPIDWVLLPRRIRYLLRAKLAFDELHKSRTMLYNAQRIARLGNWEFDLETNVFTCS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEC
EESCRIFGIRDHRQGKSHRALMRRVHPEDRVTVKKAIFQAFRTGVGYCMDHRIVLDDGVE
CCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHH
RIVSQHAELLSADDGRTSRLVGTVHDITERTLAEERIRYLAHHDTLTALPNRFQFEERME
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
QALAFAQRNGFMMAVLFLDLDHFKKVNDTLGHHAGDRLLQEAAGRLMKCLRRSDTLTHAS
HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC
REDASPFISRMGGDEFTILLTDLAHPQDAARVSQRIITALSKRYVIGGHEVFVGASIGIS
CCCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCEEECCCEEEEEEECCEE
LFPSDGEDCDQLLRNADTAMYHAKELGRNTYQYYSGSMNAMALERLTLENNLRWALKRNE
ECCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCC
FRLCYQPQLDAASGRVVGMEALLSWHRPGCDVVPPDDFIPLAEETGLIASIGEWVLWNAC
EEEEECCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
AQAVTWLHEGLPPVRVAVNLSSLQFRSRRLAELVRKVLRATGLPPSHLELEITEGVFMSN
HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEECC
EEDAAVVIRDLKKMGVRFSVDDFGTGYSSLSRLSRFPLDALKIDRSFVRDISADPAAAGL
CCCHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHH
TAAIIAMARNLGLNVIAEGVETHEQFAFLRANGCAEVQGFLFSQPLNPDAAAAFLRARSR
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MFSRLVPDIILLDVVMPGMGGFDVCRRIRRLPGGDRVQILVMTSLDDTGAIDEAYEAGAS
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHCCCH
DFLAKPIDWVLLPRRIRYLLRAKLAFDELHKSRTMLYNAQRIARLGNWEFDLETNVFTCS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEC
EESCRIFGIRDHRQGKSHRALMRRVHPEDRVTVKKAIFQAFRTGVGYCMDHRIVLDDGVE
CCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHH
RIVSQHAELLSADDGRTSRLVGTVHDITERTLAEERIRYLAHHDTLTALPNRFQFEERME
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
QALAFAQRNGFMMAVLFLDLDHFKKVNDTLGHHAGDRLLQEAAGRLMKCLRRSDTLTHAS
HHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC
REDASPFISRMGGDEFTILLTDLAHPQDAARVSQRIITALSKRYVIGGHEVFVGASIGIS
CCCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCEEECCCEEEEEEECCEE
LFPSDGEDCDQLLRNADTAMYHAKELGRNTYQYYSGSMNAMALERLTLENNLRWALKRNE
ECCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCC
FRLCYQPQLDAASGRVVGMEALLSWHRPGCDVVPPDDFIPLAEETGLIASIGEWVLWNAC
EEEEECCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
AQAVTWLHEGLPPVRVAVNLSSLQFRSRRLAELVRKVLRATGLPPSHLELEITEGVFMSN
HHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEECC
EEDAAVVIRDLKKMGVRFSVDDFGTGYSSLSRLSRFPLDALKIDRSFVRDISADPAAAGL
CCCHHHHHHHHHHCCCEEEEHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHH
TAAIIAMARNLGLNVIAEGVETHEQFAFLRANGCAEVQGFLFSQPLNPDAAAAFLRARSR
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]