Click here to switch to the map view.

The map label for this gene is ydiC [H]

Identifier: 39997011

GI number: 39997011

Start: 2092586

End: 2093278

Strand: Reverse

Name: ydiC [H]

Synonym: GSU1913

Alternate gene names: 39997011

Gene position: 2093278-2092586 (Counterclockwise)

Preceding gene: 39997012

Following gene: 39997010

Centisome position: 54.88

GC content: 62.05

Gene sequence:

>693_bases
GTGAAGATCCTCACCATTGACACCTCCACCTCCACGTGCAGTGCGGCACTGAGCATCGACGGCCGGTGCGCGGGCGAATA
TCTTCTGGAAGCCGAGCGTCATCCGTCGGAGCGTCTGCTGGCAGCCGTAGATATTCTGCTTCGGGATACCGGCATGGAGT
TGGAGGAACTGGACGGTTTCGGCGTAGCATTGGGGCCGGGATCGTTCACCGGTGTTCGGATCGGAGTGGCCACGGTCAAG
GGGCTGGCCCTGGCAACCGGCAAGCCTGCCGTTGGTTTCTCGTCCCTCGCCATGCTCGCCCTGAACCTCCCCTGGAGCTT
GTTGCCGGTTTGCACCCTGTTCGACGCTCGCAAAAAAGAGGTGTACGGGGGGCTCTATAGGGTGACGTCAGCTCCCGAAC
CGGTTATTGTCGACCGCGTTGCACCGCCTGAACGCTTCCTCGAGGCGATTGAAGGTGAGGCTATATTCGTGGGAGACGGG
GCCATCCGGTACCGGGAAGCCATCGAGTCGATCCTGGGACATCGTGCTTTCTTTGCCCCTGCGCACTGTCACCAGCCCCG
AGCCTCAGCCGGAGCACTTCTGGCGGGTGAGCTGCTGCGCACAGGCGCGGCTGTCCCGCTGCCGCTTCTTAATCCTACCT
ACATCAGACCGTCCGAGGCGGAGCTCGCCAGGATGTGCCAAAAGGCGGTATAA

Upstream 100 bases:

>100_bases
CGGGAGATCGCCCAGCAGGTCGGTCTTGCCCTTCTTATCGGTCTGATGGTGCTGGCATTCTATAACGATATCGCCCGTTA
CATCGTGGGACAAGGATAGC

Downstream 100 bases:

>100_bases
CGCCATTTTATTGGAGTTGACACCGCACCCCCGGTTGTATTATGTTCACACTTTACCTTACCGACCACGCCAGACTCATC
CCCTCTCGACAGAGGGTGAT

Product: glycoprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKILTIDTSTSTCSAALSIDGRCAGEYLLEAERHPSERLLAAVDILLRDTGMELEELDGFGVALGPGSFTGVRIGVATVK
GLALATGKPAVGFSSLAMLALNLPWSLLPVCTLFDARKKEVYGGLYRVTSAPEPVIVDRVAPPERFLEAIEGEAIFVGDG
AIRYREAIESILGHRAFFAPAHCHQPRASAGALLAGELLRTGAAVPLPLLNPTYIRPSEAELARMCQKAV

Sequences:

>Translated_230_residues
MKILTIDTSTSTCSAALSIDGRCAGEYLLEAERHPSERLLAAVDILLRDTGMELEELDGFGVALGPGSFTGVRIGVATVK
GLALATGKPAVGFSSLAMLALNLPWSLLPVCTLFDARKKEVYGGLYRVTSAPEPVIVDRVAPPERFLEAIEGEAIFVGDG
AIRYREAIESILGHRAFFAPAHCHQPRASAGALLAGELLRTGAAVPLPLLNPTYIRPSEAELARMCQKAV
>Mature_230_residues
MKILTIDTSTSTCSAALSIDGRCAGEYLLEAERHPSERLLAAVDILLRDTGMELEELDGFGVALGPGSFTGVRIGVATVK
GLALATGKPAVGFSSLAMLALNLPWSLLPVCTLFDARKKEVYGGLYRVTSAPEPVIVDRVAPPERFLEAIEGEAIFVGDG
AIRYREAIESILGHRAFFAPAHCHQPRASAGALLAGELLRTGAAVPLPLLNPTYIRPSEAELARMCQKAV

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=168, Percent_Identity=33.9285714285714, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 24412; Mature: 24412

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILTIDTSTSTCSAALSIDGRCAGEYLLEAERHPSERLLAAVDILLRDTGMELEELDGF
CEEEEEECCCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCCCC
GVALGPGSFTGVRIGVATVKGLALATGKPAVGFSSLAMLALNLPWSLLPVCTLFDARKKE
EEEECCCCCCEEEEEHHHHHHEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VYGGLYRVTSAPEPVIVDRVAPPERFLEAIEGEAIFVGDGAIRYREAIESILGHRAFFAP
HHCCEEEECCCCCCEEEECCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHCCC
AHCHQPRASAGALLAGELLRTGAAVPLPLLNPTYIRPSEAELARMCQKAV
HHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKILTIDTSTSTCSAALSIDGRCAGEYLLEAERHPSERLLAAVDILLRDTGMELEELDGF
CEEEEEECCCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHCCCC
GVALGPGSFTGVRIGVATVKGLALATGKPAVGFSSLAMLALNLPWSLLPVCTLFDARKKE
EEEECCCCCCEEEEEHHHHHHEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VYGGLYRVTSAPEPVIVDRVAPPERFLEAIEGEAIFVGDGAIRYREAIESILGHRAFFAP
HHCCEEEECCCCCCEEEECCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCHHHCCC
AHCHQPRASAGALLAGELLRTGAAVPLPLLNPTYIRPSEAELARMCQKAV
HHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]