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The map label for this gene is psd

Identifier: 39997006

GI number: 39997006

Start: 2086636

End: 2087292

Strand: Reverse

Name: psd

Synonym: GSU1908

Alternate gene names: 39997006

Gene position: 2087292-2086636 (Counterclockwise)

Preceding gene: 39997007

Following gene: 39997005

Centisome position: 54.73

GC content: 58.75

Gene sequence:

>657_bases
ATGCGGAATGAAAACACCCCCATAGCAGTCGAGGGGTATCCCTTTATCGCCATTGCCGGCGTTCTGACACTCATCCTAGC
CGCCGTATCCTGGCATGCTCCCGTTGTCTGGGCGGGGACGGCTTTCTTTCTGACAGTCACGCTGTTCGTTGCCTTTTTCT
TCCGCAATCCCGAACGGATAACCCCTGGCAACGAGAATGCCGTAGTTGCACCCGCAGACGGTGTTGTCATCTATCTCGGA
CCTGCCCGCGAAGAGCACCTGGGAGTGGAAACCACGAAAATCAGCATCTTCATGTCGGTGTTCAACGTCCACATCAACCG
TGCACCGGTGAGTGGCACGGTGCTCGACACCTTCTACGTGAAGGGAAAATTTCTCGATGTGCGCGACGATCGCGCGACCT
TCGAGAACGAGCAGGCGGGGCTGGTCATTGAGACGGCCCGTGGCCTTCGACTGGCTGTCGTGCAGGTGGCGGGTCTCATT
GCCCGGCGTATCGTTTGCTACGCAGGGAAGGGGGACCGGCTCACCAGGGGGGGGCGTTATGGTCTGATCCGGTTCGGTTC
GCGTCTCGATATCTATCTGCCGACCACTACCGAGGTCAAGGTCGCTCTAGGCGAGAAGACGGTAGCCGGTGAAACCGTCC
TGGGGATTCTGCCATGA

Upstream 100 bases:

>100_bases
CGGTGAGGCCGGATACGGCGGGAGTTCAGGCTCCACGGCCGCATCCGGCCTCATTTGCCGTTTGACGGGTGGCATCCGGT
GTTAAACCCGAGGTCCATTG

Downstream 100 bases:

>100_bases
ATGGTGAAAAAATCGATATGTCGGAGAGTATGCGCAAGGGTATTTATATCCTTCCCAACCTCTTCACCACGGGGAGCCTT
TTCGCGGGCTTCTACGGCAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MRNENTPIAVEGYPFIAIAGVLTLILAAVSWHAPVVWAGTAFFLTVTLFVAFFFRNPERITPGNENAVVAPADGVVIYLG
PAREEHLGVETTKISIFMSVFNVHINRAPVSGTVLDTFYVKGKFLDVRDDRATFENEQAGLVIETARGLRLAVVQVAGLI
ARRIVCYAGKGDRLTRGGRYGLIRFGSRLDIYLPTTTEVKVALGEKTVAGETVLGILP

Sequences:

>Translated_218_residues
MRNENTPIAVEGYPFIAIAGVLTLILAAVSWHAPVVWAGTAFFLTVTLFVAFFFRNPERITPGNENAVVAPADGVVIYLG
PAREEHLGVETTKISIFMSVFNVHINRAPVSGTVLDTFYVKGKFLDVRDDRATFENEQAGLVIETARGLRLAVVQVAGLI
ARRIVCYAGKGDRLTRGGRYGLIRFGSRLDIYLPTTTEVKVALGEKTVAGETVLGILP
>Mature_218_residues
MRNENTPIAVEGYPFIAIAGVLTLILAAVSWHAPVVWAGTAFFLTVTLFVAFFFRNPERITPGNENAVVAPADGVVIYLG
PAREEHLGVETTKISIFMSVFNVHINRAPVSGTVLDTFYVKGKFLDVRDDRATFENEQAGLVIETARGLRLAVVQVAGLI
ARRIVCYAGKGDRLTRGGRYGLIRFGSRLDIYLPTTTEVKVALGEKTVAGETVLGILP

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_GEOSL (Q74BX0)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_952957.1
- GeneID:   2688413
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU1908
- NMPDR:   fig|243231.1.peg.1895
- TIGR:   GSU1908
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   GSUL243231:GSU_1908-MONOMER
- BRENDA:   4.1.1.65
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 23678; Mature: 23678

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNENTPIAVEGYPFIAIAGVLTLILAAVSWHAPVVWAGTAFFLTVTLFVAFFFRNPERI
CCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCCCC
TPGNENAVVAPADGVVIYLGPAREEHLGVETTKISIFMSVFNVHINRAPVSGTVLDTFYV
CCCCCCEEEECCCCEEEEECCCCCHHCCCCHHHHEEEEEEHEEEEECCCCCCEEEEEEEE
KGKFLDVRDDRATFENEQAGLVIETARGLRLAVVQVAGLIARRIVCYAGKGDRLTRGGRY
EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCE
GLIRFGSRLDIYLPTTTEVKVALGEKTVAGETVLGILP
EEEEECCEEEEEECCCCEEEEEECCCEECCCEEEEECC
>Mature Secondary Structure
MRNENTPIAVEGYPFIAIAGVLTLILAAVSWHAPVVWAGTAFFLTVTLFVAFFFRNPERI
CCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCCCC
TPGNENAVVAPADGVVIYLGPAREEHLGVETTKISIFMSVFNVHINRAPVSGTVLDTFYV
CCCCCCEEEECCCCEEEEECCCCCHHCCCCHHHHEEEEEEHEEEEECCCCCCEEEEEEEE
KGKFLDVRDDRATFENEQAGLVIETARGLRLAVVQVAGLIARRIVCYAGKGDRLTRGGRY
EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCE
GLIRFGSRLDIYLPTTTEVKVALGEKTVAGETVLGILP
EEEEECCEEEEEECCCCEEEEEECCCEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA