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The map label for this gene is yrbE [C]

Identifier: 39996998

GI number: 39996998

Start: 2077760

End: 2078533

Strand: Reverse

Name: yrbE [C]

Synonym: GSU1900

Alternate gene names: 39996998

Gene position: 2078533-2077760 (Counterclockwise)

Preceding gene: 39996999

Following gene: 39996997

Centisome position: 54.5

GC content: 56.33

Gene sequence:

>774_bases
ATGGGCATGTTTGATCGAGTTGGCAAGAAAGTTCTGTCCTTTCACGAAGTATTGGGTGAAATGCTGATGCTGCTCGGCAG
AACGGTATGGTTTTTCCGGGAGGCTCCCCGGAACCTGCCGAGCATTTTCAACCAGATGGCGATCATTGGTTATGAGACTG
TGCCTATTGCGTCGGTCATGGCCTTTTTCGTGGGGATGGTCTTGGCGCTCCAGACCGGTGTCGAACTTCAGAAATACGGA
ACCCAGAACATCATCGGCGGTATCGTGGGGCTTTCCATGGTACGCGAGCTGGGACCGGTCATGACCAGCTTTCTCGTTGC
CGGCCGGGTTGGTTCGGCCATGGCGGCGGAGATAGGCGTGATGAAGGTCTATGAGGAGATCGATGCACTCAAGACCCTCG
ATATCAACCCCGTGCGCTACCTGGCCATGCCGCGGCTTATAGCCTGCCTGGTGTGCGTACCGGCTCTGGTCATCTTCGCC
AATGCCGTCGGGATTGTGGGGGGGGCCATCATGAGCCATCTCCATCCGAAGATATTCATTTCCTACTCGACGTATTACGA
TAGTCTCAAGACGGCCCTCAAGCTGAAGGAGGTGGGGGCTGGCCTGGTGAAGGCAACGGTTTTCGGCGGGATTATCGCGC
TCGTTGCCTGTTATACGGGATTCAAGACCAGCGGTGGCGCCCGGGGCATCGCGCAGGCAACGACCCGGGCCGTGGTCTTG
TCGTTCATGTTGATTCTGGTGGCCGATTATTTCCTCACCAGGATTCTGATGTAA

Upstream 100 bases:

>100_bases
TCTGGTTGCCCTTCGACCTGGAATGGACGGGAAACAGCCACGAGGTACGGGGAGTGGCGCCTCCCGGCGAAACTCGTATC
GAGGCGAGGTGTGAACCCTG

Downstream 100 bases:

>100_bases
CTAAGATGAGTAGTACGGCCTGTCGGGTGATGGGGAGGAGAGTTCATGGCGTTGTCGACTGAAAAGAAGGTGGGTTTTTT
CTTCATGGCCGGATTGGTGG

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MGMFDRVGKKVLSFHEVLGEMLMLLGRTVWFFREAPRNLPSIFNQMAIIGYETVPIASVMAFFVGMVLALQTGVELQKYG
TQNIIGGIVGLSMVRELGPVMTSFLVAGRVGSAMAAEIGVMKVYEEIDALKTLDINPVRYLAMPRLIACLVCVPALVIFA
NAVGIVGGAIMSHLHPKIFISYSTYYDSLKTALKLKEVGAGLVKATVFGGIIALVACYTGFKTSGGARGIAQATTRAVVL
SFMLILVADYFLTRILM

Sequences:

>Translated_257_residues
MGMFDRVGKKVLSFHEVLGEMLMLLGRTVWFFREAPRNLPSIFNQMAIIGYETVPIASVMAFFVGMVLALQTGVELQKYG
TQNIIGGIVGLSMVRELGPVMTSFLVAGRVGSAMAAEIGVMKVYEEIDALKTLDINPVRYLAMPRLIACLVCVPALVIFA
NAVGIVGGAIMSHLHPKIFISYSTYYDSLKTALKLKEVGAGLVKATVFGGIIALVACYTGFKTSGGARGIAQATTRAVVL
SFMLILVADYFLTRILM
>Mature_256_residues
GMFDRVGKKVLSFHEVLGEMLMLLGRTVWFFREAPRNLPSIFNQMAIIGYETVPIASVMAFFVGMVLALQTGVELQKYGT
QNIIGGIVGLSMVRELGPVMTSFLVAGRVGSAMAAEIGVMKVYEEIDALKTLDINPVRYLAMPRLIACLVCVPALVIFAN
AVGIVGGAIMSHLHPKIFISYSTYYDSLKTALKLKEVGAGLVKATVFGGIIALVACYTGFKTSGGARGIAQATTRAVVLS
FMLILVADYFLTRILM

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=224, Percent_Identity=31.6964285714286, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 27730; Mature: 27599

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GMFDRVGKKVLSFHEVLGEMLMLLGRTVWFFREAPRNLPSIFNQMAIIGYETVPIASVM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
AFFVGMVLALQTGVELQKYGTQNIIGGIVGLSMVRELGPVMTSFLVAGRVGSAMAAEIGV
HHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
MKVYEEIDALKTLDINPVRYLAMPRLIACLVCVPALVIFANAVGIVGGAIMSHLHPKIFI
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEE
SYSTYYDSLKTALKLKEVGAGLVKATVFGGIIALVACYTGFKTSGGARGIAQATTRAVVL
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
SFMLILVADYFLTRILM
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA