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The map label for this gene is udp [H]

Identifier: 39996763

GI number: 39996763

Start: 1827286

End: 1828257

Strand: Direct

Name: udp [H]

Synonym: GSU1663

Alternate gene names: 39996763

Gene position: 1827286-1828257 (Clockwise)

Preceding gene: 39996760

Following gene: 39996764

Centisome position: 47.91

GC content: 60.08

Gene sequence:

>972_bases
ATGGGCAAACTGCTCACCCCGGATGACCTGCCGATTGTACGGGGCAGAGTGTACCATCTCGATTTGGCGCCTGAAGAGTT
GGCACGGCGCGTGATCGTGGTGGGGGACCCCGATCGGGTCCCTGTGCTGGCTGAGGAGTTACTGGCACTAAGAGAGGTGG
ACCGTTTCCACCGTGGTTTTCGCACCATTACCGGTGTGACCGCTGAAACCGGCCAACGGGTTTCCTTTGTCACCTCGGGG
ATCGGCGCTCCATCAACGGAAATTGTCCTCAATGAACTGGCAGCACTCAACGAGGTTGATTTTGCCTCAATGACCCGGCG
CGAGCGGTGGCAACCGTTGACCCTTGTGCGCCTCGGTACCTCCGGCGGGCTCAATCCGGTCACCCCTGTCGGCACGCTAA
TCCTGACCGACTATGTGGTGGGCCTGGACAACACCGCCCTTTACTATGACATCCCGTTACCCGATGAGGCCTGCGCCCTG
CTGGAAGAGAAGGTTGGCTCTGTCCTTACCGGCACAGAACTGCCGGGCGCGCGCTTTGCCGGTAAAATTGCCCCGTATGC
CGCTAGGTCCGACCGAGGCCTGCTGGCTTCGCTCACTGCTGCGGCGAGCACCCTGGAGTTAAACTGGACCCGGGGCCTCA
CCATCTCCAGTGCGGGTTTCTTTGCGGAACAGGGGAGAGGCGTTGCACGTGTCGGCACTACCCAGGTGAATCTGCTCGAC
GCTTTCGAGCGCCTTGCCAGTCCCTGGCCGGGGCTCGAACTCCAGAACATGGAGATGGAAGCAGGGTTTTTCCTTCATTT
TCTTGGAGGGATGAGGTACCGTGCCGCCGTGGTGTGTGTGGTGATCAATCAACGTTCGAGTGGTGTTTTCATGGCTGATT
ACCGCCGTCAGGTGCTGGACGGCGCCCGGCTCATTCTGCGGGCATTCAAGGAATACGGAGATGCGCGAGCCAAGTCGGGT
GCATTGGCTTGA

Upstream 100 bases:

>100_bases
ATTCGCCTCCAATGGGCTTGAAATCTGACGGGGCGAGGCTTGCCTTTGTGCAATTCACCGATACAGTAACCTCAAGATTT
ATGCGATGAAGGGGGCATAT

Downstream 100 bases:

>100_bases
CCTTTGTACGAAGATTGTTTCACTTGTCAGTGAGAATAGATTGAGTAGGCAGAGGCGATCATAGGAACCATGGATCTGTG
CGAGCAATCGATTTCAGGCA

Product: phosphoribosylglycinamide formyltransferase

Products: NA

Alternate protein names: UPase; UrdPase [H]

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MGKLLTPDDLPIVRGRVYHLDLAPEELARRVIVVGDPDRVPVLAEELLALREVDRFHRGFRTITGVTAETGQRVSFVTSG
IGAPSTEIVLNELAALNEVDFASMTRRERWQPLTLVRLGTSGGLNPVTPVGTLILTDYVVGLDNTALYYDIPLPDEACAL
LEEKVGSVLTGTELPGARFAGKIAPYAARSDRGLLASLTAAASTLELNWTRGLTISSAGFFAEQGRGVARVGTTQVNLLD
AFERLASPWPGLELQNMEMEAGFFLHFLGGMRYRAAVVCVVINQRSSGVFMADYRRQVLDGARLILRAFKEYGDARAKSG
ALA

Sequences:

>Translated_323_residues
MGKLLTPDDLPIVRGRVYHLDLAPEELARRVIVVGDPDRVPVLAEELLALREVDRFHRGFRTITGVTAETGQRVSFVTSG
IGAPSTEIVLNELAALNEVDFASMTRRERWQPLTLVRLGTSGGLNPVTPVGTLILTDYVVGLDNTALYYDIPLPDEACAL
LEEKVGSVLTGTELPGARFAGKIAPYAARSDRGLLASLTAAASTLELNWTRGLTISSAGFFAEQGRGVARVGTTQVNLLD
AFERLASPWPGLELQNMEMEAGFFLHFLGGMRYRAAVVCVVINQRSSGVFMADYRRQVLDGARLILRAFKEYGDARAKSG
ALA
>Mature_322_residues
GKLLTPDDLPIVRGRVYHLDLAPEELARRVIVVGDPDRVPVLAEELLALREVDRFHRGFRTITGVTAETGQRVSFVTSGI
GAPSTEIVLNELAALNEVDFASMTRRERWQPLTLVRLGTSGGLNPVTPVGTLILTDYVVGLDNTALYYDIPLPDEACALL
EEKVGSVLTGTELPGARFAGKIAPYAARSDRGLLASLTAAASTLELNWTRGLTISSAGFFAEQGRGVARVGTTQVNLLDA
FERLASPWPGLELQNMEMEAGFFLHFLGGMRYRAAVVCVVINQRSSGVFMADYRRQVLDGARLILRAFKEYGDARAKSGA
LA

Specific function: Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synth

COG id: COG2820

COG function: function code F; Uridine phosphorylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PNP/UDP phosphorylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018017
- InterPro:   IPR018016
- InterPro:   IPR000845
- InterPro:   IPR010058 [H]

Pfam domain/function: PF01048 PNP_UDP_1 [H]

EC number: =2.4.2.3 [H]

Molecular weight: Translated: 35034; Mature: 34903

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKLLTPDDLPIVRGRVYHLDLAPEELARRVIVVGDPDRVPVLAEELLALREVDRFHRGF
CCCCCCCCCCCEECCEEEEEECCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
RTITGVTAETGQRVSFVTSGIGAPSTEIVLNELAALNEVDFASMTRRERWQPLTLVRLGT
HHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECC
SGGLNPVTPVGTLILTDYVVGLDNTALYYDIPLPDEACALLEEKVGSVLTGTELPGARFA
CCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCEECCCCCCCCHHH
GKIAPYAARSDRGLLASLTAAASTLELNWTRGLTISSAGFFAEQGRGVARVGTTQVNLLD
CCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCEEEECCCCHHHHCCCEEEECCCHHHHHH
AFERLASPWPGLELQNMEMEAGFFLHFLGGMRYRAAVVCVVINQRSSGVFMADYRRQVLD
HHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEHHHHHHHHHH
GARLILRAFKEYGDARAKSGALA
HHHHHHHHHHHHCCHHCCCCCCC
>Mature Secondary Structure 
GKLLTPDDLPIVRGRVYHLDLAPEELARRVIVVGDPDRVPVLAEELLALREVDRFHRGF
CCCCCCCCCCEECCEEEEEECCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
RTITGVTAETGQRVSFVTSGIGAPSTEIVLNELAALNEVDFASMTRRERWQPLTLVRLGT
HHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECC
SGGLNPVTPVGTLILTDYVVGLDNTALYYDIPLPDEACALLEEKVGSVLTGTELPGARFA
CCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCEECCCCCCCCHHH
GKIAPYAARSDRGLLASLTAAASTLELNWTRGLTISSAGFFAEQGRGVARVGTTQVNLLD
CCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCEEEECCCCHHHHCCCEEEECCCHHHHHH
AFERLASPWPGLELQNMEMEAGFFLHFLGGMRYRAAVVCVVINQRSSGVFMADYRRQVLD
HHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEHHHHHHHHHH
GARLILRAFKEYGDARAKSGALA
HHHHHHHHHHHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]