| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is comEC [H]
Identifier: 39996757
GI number: 39996757
Start: 1817400
End: 1819715
Strand: Direct
Name: comEC [H]
Synonym: GSU1657
Alternate gene names: 39996757
Gene position: 1817400-1819715 (Clockwise)
Preceding gene: 39996753
Following gene: 39996758
Centisome position: 47.65
GC content: 58.85
Gene sequence:
>2316_bases ATGTTCCCTCCCTGGCTTGCCTGGCTTTGCCTTGCGGGTTCAACGGCGCTCATTTTCTTCAGGAGCGCAGTCCCTCTTAT AGTTGCTGTCGGGCTCACCTTTTTCGTCTGGGGAGCCTCGTCCCTTGCCCCTTTTCTCTATCCGGATCTGTCGTCTACCC ATGTGGCCAGATACACCGGCTACGGACCGGTAATCATCGAAGGTATTGTCGATTCACGGCCCGACGTCCGCCCCAGTGAA GGGAAGTTTTGCCTGGCCGCCGAATCTGTCATAGCCGCCGGTTCGACACTGCCCGCAAGCGGACGGCTCATAGTCTATGT GAAGGCAGGAATGGTACCGTTTCTCACTGGTGATCGGGTGCGTTTTCGGGCCAAGGTTGCAGAGCCCTCCAATTATGGAA TTCCGGGCGAATATGACTATCGGCGCTCCCTGGCGTATCGGGACATCCACGCCACGGCGTTTGTAAGGCATGCCGACGAT ATCCTGTTGATGCGACAAGCAGTGGCCTTTCCGGTGCAACGTTTTTTCGATCGATCGGCAGCCAAGCTCGGCGATGTCAT CGGTCGGTATTCTCCCAACGAAGGAGGCGTTCTCCGGGCGCTCCTGCTGGGGGAGCGGGGATTCGTCTCTAAAAAGCTGG AAGAGGCCTACGCACGTGCCGGTGTAAATCATATCCTCTCAATCTCCGGTTTCCATGTGGGAATTATTGCTCTGGTCATC TACCGGGCTCTGCTTCTACTGCTCAGTCGCTTCGAGCGCCTTGCCCTGCAATTCAACCTGCGGCGGACAGCACTGCTGGC GACACTTCCCCCTGTTACATTCTACCTGTTTCTTTCCGGTGCCGCCCCGGCCACGGTCCGTTCCGTGCTGATGATAGCCG TAATCACCCTCGCGCTCTGGCTGGAGCGTGAAACAGACCCGATCAACGTATTGACCATGGCGGCCCTCGCAATGCTCGCT GCCAATCCCCCGTCGCTGTTCGATATTTCCTTCCAGTTGTCGTTTCTCGCCCTTTGGGGACTTGTGGTCCTGACGCCGGT TTTCACTCATCCGTTGTGCACTCTGGATAATGGAGTGGTCAAGAACGTCATCCTGCTGCTGGCCGCTTCGACTGCAGCGA CCCTCGTCACGTTTCTTCCCGTGGGGCATGCCTTTCATCGGGCAACTGTGGCAGGGATTATCAGCAACGTTTTCATCGTA CCGTTGATGGGGTACGGAGCGGTGGTGGCCGGATTCGCCGCGTTGCCGCTCATTGCGGTTGCCCCGGTTGCGGCCGGGCC GCTCATTACTATTGCTTCCTGGCTCGTTGCATTGTCCAACCGGATTATCGAGTGGCTGGCACGGATTCCCCCGGTCCCCC TTCACAGCGTCACCAGGAGTGATCTGCTCGTGTCGTTTCTGGTGCTGCTGGGATTAACTTTGCTGCCCGGTCGCCGTGCG CGGATCCTGGTCGCAGGAATTGGCGCCTTAGCACTTTCCGCTCTTCACTTGCCTGCCATGGCGGGAGGCGATGCCAAGCT CGTAATCACCTTTCTGAGTGTAGGGCAGGGGGAGTCAACGCTCGTTTCTCTTCCCGACGGCAAGATCATGCTGGTGGACG GGGGAGGAGCCGTTCATGGAGGCGGAACCGATGTGGGGGAACGACTTCTTGTGCCTGCTCTCTGGAGTATGGGGGTGGAA TCTATCGATTATCTTGTATTGACCCACCCTCATCCCGACCACCTGGAAGGCCTTCTCTATCTGGCAACGGCTATGCCCGT TGGTGAGTTCTGGGAAACGGGGCAGTCCACGGAAAACACGTCACTGGCAGAGTTGAGGGCCCGATTGGTCGCGCAGGGAG TGCCCATCAAGCACCTGTCCGCCGCAACAGCGCCGTTCACTGTCGGCGGTGCTCGGGTGGAACCGCTCTGGCCATGCGAC AAGAGCCCGGGGAAGGGGGCTGATAATGATGATTCACTGGTTTTCAGACTTGCCCTTGGCGGCACGTCCATCCTGTTCAC CGGCGATATCGGTGCTCCGGCCGAGGATGTCCTTGCGAACGATCCGGCGCGTCTGCGTTGCACGGTGCTGAAGGTGCCGC ACCATGGCAGCCGCTACTCATCATCCCCTTGCTTTCTCGACGCAGCATCGCCTCAAGTGGCCCTGATTTCCGCCGGGCGC AGAAACAACTTCGGGCTTCCCGCACCTGAAACGCTCACCCGCCTGGTAGCCCGCGGGATAGATGTTTATCGTACTGACCG GGATGGTACGGTGCAGGTTACCTTCACCGGGGAGACGTGGGCGGTGGGTACCTTCGCGAAAGGGCATTTTCGTTGA
Upstream 100 bases:
>100_bases GCGGGGCGGCCGGTAGGGATATCGAGTGCATCAACGGCCTTTCCTCGTGCCGCTGCTCGGCCTAATGGGAGGTTTGTGCG CCACGCACCATTTTGATCTG
Downstream 100 bases:
>100_bases CAAGTGGACCGCATTATCTGATAGTCTTGGGAAGACTTGCCACTACCCCGGGAGTTGTGCATGGAACGGATTCTCGTTGT CGAAGATGACCGTTTTTTTC
Product: DNA internalization-related competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 771; Mature: 771
Protein sequence:
>771_residues MFPPWLAWLCLAGSTALIFFRSAVPLIVAVGLTFFVWGASSLAPFLYPDLSSTHVARYTGYGPVIIEGIVDSRPDVRPSE GKFCLAAESVIAAGSTLPASGRLIVYVKAGMVPFLTGDRVRFRAKVAEPSNYGIPGEYDYRRSLAYRDIHATAFVRHADD ILLMRQAVAFPVQRFFDRSAAKLGDVIGRYSPNEGGVLRALLLGERGFVSKKLEEAYARAGVNHILSISGFHVGIIALVI YRALLLLLSRFERLALQFNLRRTALLATLPPVTFYLFLSGAAPATVRSVLMIAVITLALWLERETDPINVLTMAALAMLA ANPPSLFDISFQLSFLALWGLVVLTPVFTHPLCTLDNGVVKNVILLLAASTAATLVTFLPVGHAFHRATVAGIISNVFIV PLMGYGAVVAGFAALPLIAVAPVAAGPLITIASWLVALSNRIIEWLARIPPVPLHSVTRSDLLVSFLVLLGLTLLPGRRA RILVAGIGALALSALHLPAMAGGDAKLVITFLSVGQGESTLVSLPDGKIMLVDGGGAVHGGGTDVGERLLVPALWSMGVE SIDYLVLTHPHPDHLEGLLYLATAMPVGEFWETGQSTENTSLAELRARLVAQGVPIKHLSAATAPFTVGGARVEPLWPCD KSPGKGADNDDSLVFRLALGGTSILFTGDIGAPAEDVLANDPARLRCTVLKVPHHGSRYSSSPCFLDAASPQVALISAGR RNNFGLPAPETLTRLVARGIDVYRTDRDGTVQVTFTGETWAVGTFAKGHFR
Sequences:
>Translated_771_residues MFPPWLAWLCLAGSTALIFFRSAVPLIVAVGLTFFVWGASSLAPFLYPDLSSTHVARYTGYGPVIIEGIVDSRPDVRPSE GKFCLAAESVIAAGSTLPASGRLIVYVKAGMVPFLTGDRVRFRAKVAEPSNYGIPGEYDYRRSLAYRDIHATAFVRHADD ILLMRQAVAFPVQRFFDRSAAKLGDVIGRYSPNEGGVLRALLLGERGFVSKKLEEAYARAGVNHILSISGFHVGIIALVI YRALLLLLSRFERLALQFNLRRTALLATLPPVTFYLFLSGAAPATVRSVLMIAVITLALWLERETDPINVLTMAALAMLA ANPPSLFDISFQLSFLALWGLVVLTPVFTHPLCTLDNGVVKNVILLLAASTAATLVTFLPVGHAFHRATVAGIISNVFIV PLMGYGAVVAGFAALPLIAVAPVAAGPLITIASWLVALSNRIIEWLARIPPVPLHSVTRSDLLVSFLVLLGLTLLPGRRA RILVAGIGALALSALHLPAMAGGDAKLVITFLSVGQGESTLVSLPDGKIMLVDGGGAVHGGGTDVGERLLVPALWSMGVE SIDYLVLTHPHPDHLEGLLYLATAMPVGEFWETGQSTENTSLAELRARLVAQGVPIKHLSAATAPFTVGGARVEPLWPCD KSPGKGADNDDSLVFRLALGGTSILFTGDIGAPAEDVLANDPARLRCTVLKVPHHGSRYSSSPCFLDAASPQVALISAGR RNNFGLPAPETLTRLVARGIDVYRTDRDGTVQVTFTGETWAVGTFAKGHFR >Mature_771_residues MFPPWLAWLCLAGSTALIFFRSAVPLIVAVGLTFFVWGASSLAPFLYPDLSSTHVARYTGYGPVIIEGIVDSRPDVRPSE GKFCLAAESVIAAGSTLPASGRLIVYVKAGMVPFLTGDRVRFRAKVAEPSNYGIPGEYDYRRSLAYRDIHATAFVRHADD ILLMRQAVAFPVQRFFDRSAAKLGDVIGRYSPNEGGVLRALLLGERGFVSKKLEEAYARAGVNHILSISGFHVGIIALVI YRALLLLLSRFERLALQFNLRRTALLATLPPVTFYLFLSGAAPATVRSVLMIAVITLALWLERETDPINVLTMAALAMLA ANPPSLFDISFQLSFLALWGLVVLTPVFTHPLCTLDNGVVKNVILLLAASTAATLVTFLPVGHAFHRATVAGIISNVFIV PLMGYGAVVAGFAALPLIAVAPVAAGPLITIASWLVALSNRIIEWLARIPPVPLHSVTRSDLLVSFLVLLGLTLLPGRRA RILVAGIGALALSALHLPAMAGGDAKLVITFLSVGQGESTLVSLPDGKIMLVDGGGAVHGGGTDVGERLLVPALWSMGVE SIDYLVLTHPHPDHLEGLLYLATAMPVGEFWETGQSTENTSLAELRARLVAQGVPIKHLSAATAPFTVGGARVEPLWPCD KSPGKGADNDDSLVFRLALGGTSILFTGDIGAPAEDVLANDPARLRCTVLKVPHHGSRYSSSPCFLDAASPQVALISAGR RNNFGLPAPETLTRLVARGIDVYRTDRDGTVQVTFTGETWAVGTFAKGHFR
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=757, Percent_Identity=24.3064729194188, Blast_Score=132, Evalue=1e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 82221; Mature: 82221
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPPWLAWLCLAGSTALIFFRSAVPLIVAVGLTFFVWGASSLAPFLYPDLSSTHVARYTG CCCHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCEEEECC YGPVIIEGIVDSRPDVRPSEGKFCLAAESVIAAGSTLPASGRLIVYVKAGMVPFLTGDRV CCCEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCEEEEEECCCEEEECCCCE RFRAKVAEPSNYGIPGEYDYRRSLAYRDIHATAFVRHADDILLMRQAVAFPVQRFFDRSA EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKLGDVIGRYSPNEGGVLRALLLGERGFVSKKLEEAYARAGVNHILSISGFHVGIIALVI HHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCHHHHEEECCHHHHHHHHHH YRALLLLLSRFERLALQFNLRRTALLATLPPVTFYLFLSGAAPATVRSVLMIAVITLALW HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHH LERETDPINVLTMAALAMLAANPPSLFDISFQLSFLALWGLVVLTPVFTHPLCTLDNGVV HCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHH KNVILLLAASTAATLVTFLPVGHAFHRATVAGIISNVFIVPLMGYGAVVAGFAALPLIAV HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APVAAGPLITIASWLVALSNRIIEWLARIPPVPLHSVTRSDLLVSFLVLLGLTLLPGRRA HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC RILVAGIGALALSALHLPAMAGGDAKLVITFLSVGQGESTLVSLPDGKIMLVDGGGAVHG EEEEEEHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCCEECC GGTDVGERLLVPALWSMGVESIDYLVLTHPHPDHLEGLLYLATAMPVGEFWETGQSTENT CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCC SLAELRARLVAQGVPIKHLSAATAPFTVGGARVEPLWPCDKSPGKGADNDDSLVFRLALG HHHHHHHHHHHCCCCHHHHCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCEEEEEEEC GTSILFTGDIGAPAEDVLANDPARLRCTVLKVPHHGSRYSSSPCFLDAASPQVALISAGR CCEEEEECCCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCEEEEECCC RNNFGLPAPETLTRLVARGIDVYRTDRDGTVQVTFTGETWAVGTFAKGHFR CCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEECCCEEEEECCCCCCCC >Mature Secondary Structure MFPPWLAWLCLAGSTALIFFRSAVPLIVAVGLTFFVWGASSLAPFLYPDLSSTHVARYTG CCCHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCEEEECC YGPVIIEGIVDSRPDVRPSEGKFCLAAESVIAAGSTLPASGRLIVYVKAGMVPFLTGDRV CCCEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCEEEEEECCCEEEECCCCE RFRAKVAEPSNYGIPGEYDYRRSLAYRDIHATAFVRHADDILLMRQAVAFPVQRFFDRSA EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKLGDVIGRYSPNEGGVLRALLLGERGFVSKKLEEAYARAGVNHILSISGFHVGIIALVI HHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCHHHHEEECCHHHHHHHHHH YRALLLLLSRFERLALQFNLRRTALLATLPPVTFYLFLSGAAPATVRSVLMIAVITLALW HHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHEEEEEECCCCHHHHHHHHHHHHHHHHHH LERETDPINVLTMAALAMLAANPPSLFDISFQLSFLALWGLVVLTPVFTHPLCTLDNGVV HCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHH KNVILLLAASTAATLVTFLPVGHAFHRATVAGIISNVFIVPLMGYGAVVAGFAALPLIAV HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APVAAGPLITIASWLVALSNRIIEWLARIPPVPLHSVTRSDLLVSFLVLLGLTLLPGRRA HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC RILVAGIGALALSALHLPAMAGGDAKLVITFLSVGQGESTLVSLPDGKIMLVDGGGAVHG EEEEEEHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEECCCCEEEEEECCCEECC GGTDVGERLLVPALWSMGVESIDYLVLTHPHPDHLEGLLYLATAMPVGEFWETGQSTENT CCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCC SLAELRARLVAQGVPIKHLSAATAPFTVGGARVEPLWPCDKSPGKGADNDDSLVFRLALG HHHHHHHHHHHCCCCHHHHCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCEEEEEEEC GTSILFTGDIGAPAEDVLANDPARLRCTVLKVPHHGSRYSSSPCFLDAASPQVALISAGR CCEEEEECCCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCEEEEECCC RNNFGLPAPETLTRLVARGIDVYRTDRDGTVQVTFTGETWAVGTFAKGHFR CCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEECCCEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]