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The map label for this gene is yciO [C]

Identifier: 39996696

GI number: 39996696

Start: 1749952

End: 1750563

Strand: Direct

Name: yciO [C]

Synonym: GSU1596

Alternate gene names: 39996696

Gene position: 1749952-1750563 (Clockwise)

Preceding gene: 39996695

Following gene: 39996697

Centisome position: 45.88

GC content: 54.41

Gene sequence:

>612_bases
ATGCTTCTCTCCATTAATCCCGACAATCCGCAGGCACGACTTATCTCCCACGTGGCTGAGGTTCTTGGTCGTGGCGGGGT
CATCGCGTACCCGACCGACACGACCTATGGGATCGGTTGCAGCATCTTCAGTAAGAAGGGGATCGAACGAATTTATCTTC
TCAAGCAAAGGGAGAAGAAGAAGCCCTTTTCCTTTATCTGTTCGGAACTCTCAGAGGTTGCTCGTTACGCCAAGGTCAGT
AATTACGCCTACAAAATCCTGAAGCGGTATTTGCCGGGACCCTACACTTTTGTAATCGATGCAACAAGCGTAGTCCCTGA
TCTGCTGGTGACCAAGCAGAAGACGGTCGGTATTCGAATCCCTGACAACCGGATATGTATTGCGCTCGTCAAGGAGTTGG
GGCACCCGATCGTCACCACCAGCGCAAATCTCTCGGGAGAAGAACCCATCGGCGATCCGCTGGAAGTCGAGCGAACACTG
GGAAAGCAGCTCGATCTCGTCGTGGACGGCGGGAATCTCACCGCCGACGTCAGTTCGGTTGTGAGTCTGATCGGTGATTA
TCCCCAGGTGTTGCGCCGCGGGATCGGCGATGTGAGCTGGTGCGGCGAATAG

Upstream 100 bases:

>100_bases
ATGAACTGGATGAGACCGCCCGGGGTGACGGGGGCTTCGGTCACACCGGGCGGTAATCCTGGAAAATAGAGTGTACTGCT
GTCTCTGACGGAGATATGTC

Downstream 100 bases:

>100_bases
CATGAGGAAGCGAACGCTACGAATGGGGATTTACGCTCTTTCGTTGGCAGTGGCCCTCGTTACGGTGGCTACGTTTTTTC
ACGAGCAGATAGCAGGGGTG

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MLLSINPDNPQARLISHVAEVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELSEVARYAKVS
NYAYKILKRYLPGPYTFVIDATSVVPDLLVTKQKTVGIRIPDNRICIALVKELGHPIVTTSANLSGEEPIGDPLEVERTL
GKQLDLVVDGGNLTADVSSVVSLIGDYPQVLRRGIGDVSWCGE

Sequences:

>Translated_203_residues
MLLSINPDNPQARLISHVAEVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELSEVARYAKVS
NYAYKILKRYLPGPYTFVIDATSVVPDLLVTKQKTVGIRIPDNRICIALVKELGHPIVTTSANLSGEEPIGDPLEVERTL
GKQLDLVVDGGNLTADVSSVVSLIGDYPQVLRRGIGDVSWCGE
>Mature_203_residues
MLLSINPDNPQARLISHVAEVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKKKPFSFICSELSEVARYAKVS
NYAYKILKRYLPGPYTFVIDATSVVPDLLVTKQKTVGIRIPDNRICIALVKELGHPIVTTSANLSGEEPIGDPLEVERTL
GKQLDLVVDGGNLTADVSSVVSLIGDYPQVLRRGIGDVSWCGE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=162, Percent_Identity=37.037037037037, Blast_Score=81, Evalue=7e-16,
Organism=Escherichia coli, GI87081864, Length=199, Percent_Identity=43.21608040201, Blast_Score=171, Evalue=3e-44,
Organism=Escherichia coli, GI2367210, Length=163, Percent_Identity=31.2883435582822, Blast_Score=87, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17537239, Length=184, Percent_Identity=29.3478260869565, Blast_Score=77, Evalue=4e-15,
Organism=Drosophila melanogaster, GI78707274, Length=182, Percent_Identity=32.967032967033, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22193; Mature: 22193

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSINPDNPQARLISHVAEVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKK
CEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHCC
KPFSFICSELSEVARYAKVSNYAYKILKRYLPGPYTFVIDATSVVPDLLVTKQKTVGIRI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCEEEEEC
PDNRICIALVKELGHPIVTTSANLSGEEPIGDPLEVERTLGKQLDLVVDGGNLTADVSSV
CCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHH
VSLIGDYPQVLRRGIGDVSWCGE
HHHHCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLLSINPDNPQARLISHVAEVLGRGGVIAYPTDTTYGIGCSIFSKKGIERIYLLKQREKK
CEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHCC
KPFSFICSELSEVARYAKVSNYAYKILKRYLPGPYTFVIDATSVVPDLLVTKQKTVGIRI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCEEEEEC
PDNRICIALVKELGHPIVTTSANLSGEEPIGDPLEVERTLGKQLDLVVDGGNLTADVSSV
CCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHH
VSLIGDYPQVLRRGIGDVSWCGE
HHHHCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]