Click here to switch to the map view.

The map label for this gene is yhaM [C]

Identifier: 39996627

GI number: 39996627

Start: 1673198

End: 1674487

Strand: Direct

Name: yhaM [C]

Synonym: GSU1527

Alternate gene names: 39996627

Gene position: 1673198-1674487 (Clockwise)

Preceding gene: 39996626

Following gene: 39996628

Centisome position: 43.87

GC content: 59.84

Gene sequence:

>1290_bases
ATGAGCATCTATCATGATGTGATAAAAAGCGAGGTATTTCCCGCTCTCGGCTGTACCGAGCCGATTGCCGTCGCCTATGC
CGCAAGTCTGGCGGCGGAACGGCTCGGGGCCGAAGTTGAGACGGTTACCGCTTCGGTTGACCCCGGGGTGTTCAAGAATG
GCTTCGCGGTGACTGTCCCCAAGACGGGGGGGCTGAAGGGAAACGTCATCGCCGCGGCGCTCGGTGCCCTCATTGCCCGG
CCCGAGTTGAAGATGGAGATACTCTCCGGCGCTGACGAGCGACTTTTGGCGCAGGCCGAACTTCTGGTCTCCTCGGGCCG
GGCTACCGTTGCCCTGGTCAAGGAGCGGACCGATCTGTACATCGATGTTGTGGTCACCGGGGGAGGGCGCACGGCCCGGG
CCGTTCTGGAGGGGGGACATACCAACATTGTCCGGCTCGAATGCGACGGCAGGATTCTGCTGAATGCGGATGAGCCGGTT
TCGGCTGTCGACAGCCATGCCTATCGGGCCGTGCTGCGGCAGATGACGTTTTCCGAAATGATCGGCTTGCTTGATGATCT
CGATCAAGGGGATCTTGTCTATCTCAAGCGCGGCGTTGAGATGAATCTGCGCATCGCCGAAGAGGGTAAGCAACTGACCA
AGGTCGGCCATTATGTCGAGGAACTGGTGCGCAAGGGGTTTCTGCTTGCCGATGTCGTTTCGTCCAGCAAGATCCTTACC
GCCTCCGCGTCGGATGCGCGCATGGCCGGGCTGCCATACCCCGTGATGTCGAGTGGCGGCAGCGGCAATCAGGGCATTGT
CGCCATTCTCGTCCCCTACAATGTCGGCATGTTCTTTCATGTGCCTGAAGAGACCATCCTGCGCAGCATAGCCCTTTCCC
ATCTGGTCAATGCCTATATCAAGTGCCATACCGGCGACCTGGCGCCCATCTGCGGCTGCGCCATCGCCGCCGGGGTAGGC
GCCGCCGTGGCGATCGTCTATCAGCAGGCCGGACCGGATATGCACAAGATCGATCTGGCGGTCAATACCATCATCAGCGA
TATCGGTGGCATGCTGTGCGACGGTGCCAAGGGGGGCTGCGCCCTGAAGGTTGTCAGCTCGACTGATGCTGCAATCCGTG
CGGCATACATGGCCCTGAACGGGCATGGAATTTCCGAAGAAGAAGGGTTTGTCGGAAAGAGCGCCGAGGAAACCATACAC
AATCTGAGCCGCATCGCGGATAAAGGCATGGCGCTTGTGGACGATACCATGCTGTGCATCATGCTCCAGAAGCGCTCGAC
CGAACCTTGA

Upstream 100 bases:

>100_bases
TGCCGCACGCACGTGGGCGTGACCGGCCACCAACTGCCCATGGCCTGTGCCGGCAGGCCGAGCCTGCCGTTTTCAGACTT
TCATCGACAGGGGACCACTG

Downstream 100 bases:

>100_bases
AAGGGATTCGGATGACGAGCAGCAGACATGTGTCCATCTGATTTACATCAACCAACTGAACCTGCGGATCACCGGCTCTA
AAGGATTCACAGGGGGTACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MSIYHDVIKSEVFPALGCTEPIAVAYAASLAAERLGAEVETVTASVDPGVFKNGFAVTVPKTGGLKGNVIAAALGALIAR
PELKMEILSGADERLLAQAELLVSSGRATVALVKERTDLYIDVVVTGGGRTARAVLEGGHTNIVRLECDGRILLNADEPV
SAVDSHAYRAVLRQMTFSEMIGLLDDLDQGDLVYLKRGVEMNLRIAEEGKQLTKVGHYVEELVRKGFLLADVVSSSKILT
ASASDARMAGLPYPVMSSGGSGNQGIVAILVPYNVGMFFHVPEETILRSIALSHLVNAYIKCHTGDLAPICGCAIAAGVG
AAVAIVYQQAGPDMHKIDLAVNTIISDIGGMLCDGAKGGCALKVVSSTDAAIRAAYMALNGHGISEEEGFVGKSAEETIH
NLSRIADKGMALVDDTMLCIMLQKRSTEP

Sequences:

>Translated_429_residues
MSIYHDVIKSEVFPALGCTEPIAVAYAASLAAERLGAEVETVTASVDPGVFKNGFAVTVPKTGGLKGNVIAAALGALIAR
PELKMEILSGADERLLAQAELLVSSGRATVALVKERTDLYIDVVVTGGGRTARAVLEGGHTNIVRLECDGRILLNADEPV
SAVDSHAYRAVLRQMTFSEMIGLLDDLDQGDLVYLKRGVEMNLRIAEEGKQLTKVGHYVEELVRKGFLLADVVSSSKILT
ASASDARMAGLPYPVMSSGGSGNQGIVAILVPYNVGMFFHVPEETILRSIALSHLVNAYIKCHTGDLAPICGCAIAAGVG
AAVAIVYQQAGPDMHKIDLAVNTIISDIGGMLCDGAKGGCALKVVSSTDAAIRAAYMALNGHGISEEEGFVGKSAEETIH
NLSRIADKGMALVDDTMLCIMLQKRSTEP
>Mature_428_residues
SIYHDVIKSEVFPALGCTEPIAVAYAASLAAERLGAEVETVTASVDPGVFKNGFAVTVPKTGGLKGNVIAAALGALIARP
ELKMEILSGADERLLAQAELLVSSGRATVALVKERTDLYIDVVVTGGGRTARAVLEGGHTNIVRLECDGRILLNADEPVS
AVDSHAYRAVLRQMTFSEMIGLLDDLDQGDLVYLKRGVEMNLRIAEEGKQLTKVGHYVEELVRKGFLLADVVSSSKILTA
SASDARMAGLPYPVMSSGGSGNQGIVAILVPYNVGMFFHVPEETILRSIALSHLVNAYIKCHTGDLAPICGCAIAAGVGA
AVAIVYQQAGPDMHKIDLAVNTIISDIGGMLCDGAKGGCALKVVSSTDAAIRAAYMALNGHGISEEEGFVGKSAEETIHN
LSRIADKGMALVDDTMLCIMLQKRSTEP

Specific function: Unknown

COG id: COG3681

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0597 family

Homologues:

Organism=Escherichia coli, GI48994923, Length=426, Percent_Identity=35.2112676056338, Blast_Score=212, Evalue=5e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1527_GEOSL (Q74CZ2)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_952578.1
- GeneID:   2687667
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU1527
- NMPDR:   fig|243231.1.peg.1516
- TIGR:   GSU1527
- HOGENOM:   HBG296671
- OMA:   LSGMICD
- ProtClustDB:   CLSK2306770
- BioCyc:   GSUL243231:GSU_1527-MONOMER
- HAMAP:   MF_01845
- InterPro:   IPR005130
- InterPro:   IPR021144
- PIRSF:   PIRSF006054

Pfam domain/function: PF03313 SDH_alpha

EC number: NA

Molecular weight: Translated: 45064; Mature: 44932

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYHDVIKSEVFPALGCTEPIAVAYAASLAAERLGAEVETVTASVDPGVFKNGFAVTVP
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEC
KTGGLKGNVIAAALGALIARPELKMEILSGADERLLAQAELLVSSGRATVALVKERTDLY
CCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEE
IDVVVTGGGRTARAVLEGGHTNIVRLECDGRILLNADEPVSAVDSHAYRAVLRQMTFSEM
EEEEEECCCCEEEHHHCCCCCEEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
IGLLDDLDQGDLVYLKRGVEMNLRIAEEGKQLTKVGHYVEELVRKGFLLADVVSSSKILT
HHHHHCCCCCCEEEEECCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCEEEHHHCCCEEEE
ASASDARMAGLPYPVMSSGGSGNQGIVAILVPYNVGMFFHVPEETILRSIALSHLVNAYI
ECCCCCEECCCCCHHHCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHE
KCHTGDLAPICGCAIAAGVGAAVAIVYQQAGPDMHKIDLAVNTIISDIGGMLCDGAKGGC
EEECCCCCHHHHHHHHHHHHHHEEEEECCCCCCCEEHHHHHHHHHHHHHHHEECCCCCCE
ALKVVSSTDAAIRAAYMALNGHGISEEEGFVGKSAEETIHNLSRIADKGMALVDDTMLCI
EEEEECCCCHHHHEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCEEEE
MLQKRSTEP
EEECCCCCC
>Mature Secondary Structure 
SIYHDVIKSEVFPALGCTEPIAVAYAASLAAERLGAEVETVTASVDPGVFKNGFAVTVP
CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEC
KTGGLKGNVIAAALGALIARPELKMEILSGADERLLAQAELLVSSGRATVALVKERTDLY
CCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCEE
IDVVVTGGGRTARAVLEGGHTNIVRLECDGRILLNADEPVSAVDSHAYRAVLRQMTFSEM
EEEEEECCCCEEEHHHCCCCCEEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
IGLLDDLDQGDLVYLKRGVEMNLRIAEEGKQLTKVGHYVEELVRKGFLLADVVSSSKILT
HHHHHCCCCCCEEEEECCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCEEEHHHCCCEEEE
ASASDARMAGLPYPVMSSGGSGNQGIVAILVPYNVGMFFHVPEETILRSIALSHLVNAYI
ECCCCCEECCCCCHHHCCCCCCCCCEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHE
KCHTGDLAPICGCAIAAGVGAAVAIVYQQAGPDMHKIDLAVNTIISDIGGMLCDGAKGGC
EEECCCCCHHHHHHHHHHHHHHEEEEECCCCCCCEEHHHHHHHHHHHHHHHEECCCCCCE
ALKVVSSTDAAIRAAYMALNGHGISEEEGFVGKSAEETIHNLSRIADKGMALVDDTMLCI
EEEEECCCCHHHHEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCEEEE
MLQKRSTEP
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA