| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is slt [H]
Identifier: 39996584
GI number: 39996584
Start: 1624300
End: 1626543
Strand: Reverse
Name: slt [H]
Synonym: GSU1484
Alternate gene names: 39996584
Gene position: 1626543-1624300 (Counterclockwise)
Preceding gene: 39996630
Following gene: 39996583
Centisome position: 42.65
GC content: 61.76
Gene sequence:
>2244_bases ATGTACACCAGACTCCTTGTTGTCTCCCTCGCCTGCCTCCTGTTCGGGGTGTCAGCTTTTGCGCAGCCCATGGCTCCGGT CCCTGATGCACCGCTCCGCAATGCAGCACTTCGCATGAAGGATAAAGATTATCGCGCTGTGCGCGATGAGCTGCGCTCCG TCCCGCCATCTCCCGAGCGGACCTTCCTGGACGGCGTGGCAGCCCGTCGCCTTGAGCAGTGGCCCGAAGCCTCCGAGCTT CTTGGCGTTGCGGCAAAGGATCTTCCGCTGTTGGCCGATTACGCACTGTTCTGGCAGGCGGAGGCACTCATGGCGGCGAC CCGCTACGACGAGGCGGAAGAAGTGCTGCAACGACTCGTGGGGACCTGGCCCGACAGCCCGACCCTGCGAAAGGCGCGCA TGCTCCTCGCGGATGCCCAGTTCGCCCGCAAAGAGTACCGTCAGGCCCTTGCCTCCTACATACGGTTCATTGAACTGTAC CCTTCGGGAACCGACTCAGTCACCGCCAACCTGAAAACGGCCCTCTGCCGCGAAGGCCTTGACGACCCGCGACGGGCTGT CCAGGAACTGCGGGCTATCTGGCTTGCCTATCCGGCATCTCCCGTGGCTGAAACCGCGGAACAGGAACTCAAGCGACTTG AGGCGCTCGGATTCCCTGCCGTTCCGCTAACGCCCGATGAACTCCTCAAACGAGGAACTACGCTCTACAATCTCGGCAAG TACGAACGCGCCCTTGCCGTCTTCAATACCATTCCCCTCAAGGAGCAGCTTGCCGGCTTCAACGACCGCGTGGCACTGAA AATTGGCGAGACACTCCTAAAACTGAGACGGTACAAGGATGCTGCCCGCACATTCTCCAGCCTCATCGAGCGTGAGCCGA AGCGGGAGATTGCCGACGAAGCCCGTTTCCTGCTCGCCCGAGCCCAGAACAAAGCTGGCAACGATGACGAGGCATTCCTC GGCTTTCTCAAGCTTGCGGAGACGGCCCCCACGTCGGAATGGGCGGATAATGCGCTGCTGGAGGCGGCATTTGTCCGCAA ATTCCAGGGGCGGTACGCTGATCAGCTGGCAGTCCTGGAAAAACTGCTGACAACCTATCCCGGGACGAAACTCAAACCTC GAGCAATGTGGGAAACTGCCTGGGCTCGCTACAACACCGGCGACTATCGCTCTGCCGCGGAGTCATTCCGGCTTCTGACC GCTTCTGCCGACTACCGGGAACGGGCGCTGTACTGGCACGGGCGTTCCCTCCAGCGCATCGGAGAAGAAACCGTGGCCCG GCAGAGTTTTGCCATGCTTGCAGAGGAATACCCTTTTTCCTTCTATACCTTTACGGCGACCGACCCGGCACCTCAGGAAG GGGCAATACCCCTGATAGTGCACGACCTGCGCCAGACCATCTCCCCTCCTGCCGGACACGAACGAGCACGAGCACTTATC GCCATGGGGCTCCATGATCAGGCCAGGAGCGAACTCTCCATCGCCCGCAAAAACGGCTCGTCGCGGGGTAAGGGGCTCCT GGGCATCGCCCGTCTCTACCTGGAGATGAATGATTATTCATCCGCGGCCGCGGCCCTGCGCGGGGAGCAACCCCGCCGCA TGGACGGCGAAACGGCGACTACCTGGGGACTGCTCTATCCCCGCGGATTCAGCGACTCGGTCGCTGCCGAGGCAAACCGC CACACTATCCCCGAAGAATTGATCTACGGACTCATCAAGGCCGAAAGCGGCTTCTCTCCAGTCGCCCTCTCACCGGTCGG CGCGGTGGGGCTCATGCAGCTCATGCCGTCCACCGCCAAGGGCATGGTCAACGGTTCGTCCCCCGCCAACGGTATTTCAG CGCGCCTCACTGACCCAACCTTCAATGTCGGCCTCGGGGTCAGACACCTGAAAGACCTGCTCAAGCAGTACAACGGCAAT GTGGTTTCCGCCGTGGCGGCCTACAATGCGGGCTCCAGGCCGGTGGACCGGTGGCGGCGTTCCCTTGCCGGCCTGCGCGA AGACGAATTCATCGAGAACATTCCCTACTACGAAACCCGCGAGTATGTAAAAAAAGTCCTGACTTTTGCGGAGGTATACC GCAGGCTCTACCGTCCTGCCGCACCGGCCCTTGCGTTTCTTCCCCAGGTCAGCGCACCGGAACCGCCCCAACCAGCCCCG ACCAATAATGCGCCGCCAACCGCGGCACTGGCCAGCCCGCCCGAAACCTCAGCCCTGACTGCGCCGGTTCGGCAACAGCC TTAA
Upstream 100 bases:
>100_bases TTTAAGCCGTTGACGCCGGCCGGCGGTTCGGGGCCGGCGTTTTTCATGCCACTCACCGGCGTTGCGTCACCTGCGCCGTG CCCCACGAGGTTTGCAGTAT
Downstream 100 bases:
>100_bases CAACCTTCCCCTGCACTGCCAAGCAGACATCGACAGCCCAGGCACGCATTGACAGTATACTGATTATCTGTACAATGACT GTCATTGTACGCAGCGATCG
Product: soluble lytic murein transglycosylase
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 747; Mature: 747
Protein sequence:
>747_residues MYTRLLVVSLACLLFGVSAFAQPMAPVPDAPLRNAALRMKDKDYRAVRDELRSVPPSPERTFLDGVAARRLEQWPEASEL LGVAAKDLPLLADYALFWQAEALMAATRYDEAEEVLQRLVGTWPDSPTLRKARMLLADAQFARKEYRQALASYIRFIELY PSGTDSVTANLKTALCREGLDDPRRAVQELRAIWLAYPASPVAETAEQELKRLEALGFPAVPLTPDELLKRGTTLYNLGK YERALAVFNTIPLKEQLAGFNDRVALKIGETLLKLRRYKDAARTFSSLIEREPKREIADEARFLLARAQNKAGNDDEAFL GFLKLAETAPTSEWADNALLEAAFVRKFQGRYADQLAVLEKLLTTYPGTKLKPRAMWETAWARYNTGDYRSAAESFRLLT ASADYRERALYWHGRSLQRIGEETVARQSFAMLAEEYPFSFYTFTATDPAPQEGAIPLIVHDLRQTISPPAGHERARALI AMGLHDQARSELSIARKNGSSRGKGLLGIARLYLEMNDYSSAAAALRGEQPRRMDGETATTWGLLYPRGFSDSVAAEANR HTIPEELIYGLIKAESGFSPVALSPVGAVGLMQLMPSTAKGMVNGSSPANGISARLTDPTFNVGLGVRHLKDLLKQYNGN VVSAVAAYNAGSRPVDRWRRSLAGLREDEFIENIPYYETREYVKKVLTFAEVYRRLYRPAAPALAFLPQVSAPEPPQPAP TNNAPPTAALASPPETSALTAPVRQQP
Sequences:
>Translated_747_residues MYTRLLVVSLACLLFGVSAFAQPMAPVPDAPLRNAALRMKDKDYRAVRDELRSVPPSPERTFLDGVAARRLEQWPEASEL LGVAAKDLPLLADYALFWQAEALMAATRYDEAEEVLQRLVGTWPDSPTLRKARMLLADAQFARKEYRQALASYIRFIELY PSGTDSVTANLKTALCREGLDDPRRAVQELRAIWLAYPASPVAETAEQELKRLEALGFPAVPLTPDELLKRGTTLYNLGK YERALAVFNTIPLKEQLAGFNDRVALKIGETLLKLRRYKDAARTFSSLIEREPKREIADEARFLLARAQNKAGNDDEAFL GFLKLAETAPTSEWADNALLEAAFVRKFQGRYADQLAVLEKLLTTYPGTKLKPRAMWETAWARYNTGDYRSAAESFRLLT ASADYRERALYWHGRSLQRIGEETVARQSFAMLAEEYPFSFYTFTATDPAPQEGAIPLIVHDLRQTISPPAGHERARALI AMGLHDQARSELSIARKNGSSRGKGLLGIARLYLEMNDYSSAAAALRGEQPRRMDGETATTWGLLYPRGFSDSVAAEANR HTIPEELIYGLIKAESGFSPVALSPVGAVGLMQLMPSTAKGMVNGSSPANGISARLTDPTFNVGLGVRHLKDLLKQYNGN VVSAVAAYNAGSRPVDRWRRSLAGLREDEFIENIPYYETREYVKKVLTFAEVYRRLYRPAAPALAFLPQVSAPEPPQPAP TNNAPPTAALASPPETSALTAPVRQQP >Mature_747_residues MYTRLLVVSLACLLFGVSAFAQPMAPVPDAPLRNAALRMKDKDYRAVRDELRSVPPSPERTFLDGVAARRLEQWPEASEL LGVAAKDLPLLADYALFWQAEALMAATRYDEAEEVLQRLVGTWPDSPTLRKARMLLADAQFARKEYRQALASYIRFIELY PSGTDSVTANLKTALCREGLDDPRRAVQELRAIWLAYPASPVAETAEQELKRLEALGFPAVPLTPDELLKRGTTLYNLGK YERALAVFNTIPLKEQLAGFNDRVALKIGETLLKLRRYKDAARTFSSLIEREPKREIADEARFLLARAQNKAGNDDEAFL GFLKLAETAPTSEWADNALLEAAFVRKFQGRYADQLAVLEKLLTTYPGTKLKPRAMWETAWARYNTGDYRSAAESFRLLT ASADYRERALYWHGRSLQRIGEETVARQSFAMLAEEYPFSFYTFTATDPAPQEGAIPLIVHDLRQTISPPAGHERARALI AMGLHDQARSELSIARKNGSSRGKGLLGIARLYLEMNDYSSAAAALRGEQPRRMDGETATTWGLLYPRGFSDSVAAEANR HTIPEELIYGLIKAESGFSPVALSPVGAVGLMQLMPSTAKGMVNGSSPANGISARLTDPTFNVGLGVRHLKDLLKQYNGN VVSAVAAYNAGSRPVDRWRRSLAGLREDEFIENIPYYETREYVKKVLTFAEVYRRLYRPAAPALAFLPQVSAPEPPQPAP TNNAPPTAALASPPETSALTAPVRQQP
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=316, Percent_Identity=27.2151898734177, Blast_Score=103, Evalue=5e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 82797; Mature: 82797
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS00922 TRANSGLYCOSYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYTRLLVVSLACLLFGVSAFAQPMAPVPDAPLRNAALRMKDKDYRAVRDELRSVPPSPER CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCH TFLDGVAARRLEQWPEASELLGVAAKDLPLLADYALFWQAEALMAATRYDEAEEVLQRLV HHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH GTWPDSPTLRKARMLLADAQFARKEYRQALASYIRFIELYPSGTDSVTANLKTALCREGL HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC DDPRRAVQELRAIWLAYPASPVAETAEQELKRLEALGFPAVPLTPDELLKRGTTLYNLGK CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHH YERALAVFNTIPLKEQLAGFNDRVALKIGETLLKLRRYKDAARTFSSLIEREPKREIADE HHHHHHHHHCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH ARFLLARAQNKAGNDDEAFLGFLKLAETAPTSEWADNALLEAAFVRKFQGRYADQLAVLE HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLLTTYPGTKLKPRAMWETAWARYNTGDYRSAAESFRLLTASADYRERALYWHGRSLQRI HHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHH GEETVARQSFAMLAEEYPFSFYTFTATDPAPQEGAIPLIVHDLRQTISPPAGHERARALI HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH AMGLHDQARSELSIARKNGSSRGKGLLGIARLYLEMNDYSSAAAALRGEQPRRMDGETAT HHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCC TWGLLYPRGFSDSVAAEANRHTIPEELIYGLIKAESGFSPVALSPVGAVGLMQLMPSTAK EEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCHHHH GMVNGSSPANGISARLTDPTFNVGLGVRHLKDLLKQYNGNVVSAVAAYNAGSRPVDRWRR CCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHCCCCCCHHHHHH SLAGLREDEFIENIPYYETREYVKKVLTFAEVYRRLYRPAAPALAFLPQVSAPEPPQPAP HHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCC TNNAPPTAALASPPETSALTAPVRQQP CCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MYTRLLVVSLACLLFGVSAFAQPMAPVPDAPLRNAALRMKDKDYRAVRDELRSVPPSPER CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCH TFLDGVAARRLEQWPEASELLGVAAKDLPLLADYALFWQAEALMAATRYDEAEEVLQRLV HHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH GTWPDSPTLRKARMLLADAQFARKEYRQALASYIRFIELYPSGTDSVTANLKTALCREGL HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC DDPRRAVQELRAIWLAYPASPVAETAEQELKRLEALGFPAVPLTPDELLKRGTTLYNLGK CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHH YERALAVFNTIPLKEQLAGFNDRVALKIGETLLKLRRYKDAARTFSSLIEREPKREIADE HHHHHHHHHCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH ARFLLARAQNKAGNDDEAFLGFLKLAETAPTSEWADNALLEAAFVRKFQGRYADQLAVLE HHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLLTTYPGTKLKPRAMWETAWARYNTGDYRSAAESFRLLTASADYRERALYWHGRSLQRI HHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHH GEETVARQSFAMLAEEYPFSFYTFTATDPAPQEGAIPLIVHDLRQTISPPAGHERARALI HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH AMGLHDQARSELSIARKNGSSRGKGLLGIARLYLEMNDYSSAAAALRGEQPRRMDGETAT HHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCC TWGLLYPRGFSDSVAAEANRHTIPEELIYGLIKAESGFSPVALSPVGAVGLMQLMPSTAK EEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCHHHH GMVNGSSPANGISARLTDPTFNVGLGVRHLKDLLKQYNGNVVSAVAAYNAGSRPVDRWRR CCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHCCCCCCHHHHHH SLAGLREDEFIENIPYYETREYVKKVLTFAEVYRRLYRPAAPALAFLPQVSAPEPPQPAP HHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCC TNNAPPTAALASPPETSALTAPVRQQP CCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]