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The map label for this gene is ygaU [C]

Identifier: 39996564

GI number: 39996564

Start: 1605546

End: 1606235

Strand: Direct

Name: ygaU [C]

Synonym: GSU1464

Alternate gene names: 39996564

Gene position: 1605546-1606235 (Clockwise)

Preceding gene: 39996563

Following gene: 39996565

Centisome position: 42.09

GC content: 57.39

Gene sequence:

>690_bases
ATGAAGGTCCGTGCCGGCATTTCCGCACTTGTGACCATTGCGGTTCTTGCGGGGTGCGCCTCACACCTGCCGGTCTACCG
GATTGATGCTCTCGCCAGGCTTTCTGCTGTAAAGATGATGGGGGCGGAGAAGTATGCACCTCCGGAGTTGGCTAGTCTTC
AACAGGCCATTGTCGATGGGGACGCGCTCATGCAGAGTGGTGAGCATGAGCTGGCCGACAGCTATTATCTGCTGGCCATT
CGCAAAAGCGAGGCCGTGGAGCGGAGCATCGCCCGTGAGCGTGAACATGAACGGGCGATGCAGGTGCGGAGCGAGAACGA
GCGGCTTGCTCGTGAGCGCCAGAAGGCACTCGAAGAACTGAAACGCGAACTTGCGGAAAAGGAAAAGGAAGAGAAAAAGC
GAATCGAAAGAGCTCCTCAGCCTGTCCGTGACAAGGAGAAAGAAAAAGAGGTCAGGTCGTTTCCGCTCCACCATACGGTA
AAGCGTGGCGAAAGCCTTCCGCAAATCGCCGCACAGCCTGACGTTTACGGCGATGCAGCGCTCTGGCCTCTCTTGTACCG
TGCCAACCGCGATCAGATACGTGACCCTGGTAGAATATGGCCTGGACAGGTACTCAGAATTCCTCGAAATATCTCACGTG
ATGACCTCGCGGAGGCAAGGCGTTACGCGCAGGAGCGACCAGCGCCCTGA

Upstream 100 bases:

>100_bases
GGTGCTTGTCTCATGTCCGACGCCCCGTCGCCGGTTGATTCTAAGCAGCTCAGGGAGTTGGCCATCAAGGTGACGGTCAA
GCAGTGATCGGGGATTCCCT

Downstream 100 bases:

>100_bases
TCACGTGGGAAGAGACAGAAAGCCGGGATTTTCCCGGCTTTTTTGCGTCTAACCCGTTGGCTTTTTTGTAGTATACGGAA
AAGGATTTTTTCTTGACAGC

Product: LysM domain-containing protein

Products: NA

Alternate protein names: LysM Domain Lipoprotein

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKVRAGISALVTIAVLAGCASHLPVYRIDALARLSAVKMMGAEKYAPPELASLQQAIVDGDALMQSGEHELADSYYLLAI
RKSEAVERSIAREREHERAMQVRSENERLARERQKALEELKRELAEKEKEEKKRIERAPQPVRDKEKEKEVRSFPLHHTV
KRGESLPQIAAQPDVYGDAALWPLLYRANRDQIRDPGRIWPGQVLRIPRNISRDDLAEARRYAQERPAP

Sequences:

>Translated_229_residues
MKVRAGISALVTIAVLAGCASHLPVYRIDALARLSAVKMMGAEKYAPPELASLQQAIVDGDALMQSGEHELADSYYLLAI
RKSEAVERSIAREREHERAMQVRSENERLARERQKALEELKRELAEKEKEEKKRIERAPQPVRDKEKEKEVRSFPLHHTV
KRGESLPQIAAQPDVYGDAALWPLLYRANRDQIRDPGRIWPGQVLRIPRNISRDDLAEARRYAQERPAP
>Mature_229_residues
MKVRAGISALVTIAVLAGCASHLPVYRIDALARLSAVKMMGAEKYAPPELASLQQAIVDGDALMQSGEHELADSYYLLAI
RKSEAVERSIAREREHERAMQVRSENERLARERQKALEELKRELAEKEKEEKKRIERAPQPVRDKEKEKEVRSFPLHHTV
KRGESLPQIAAQPDVYGDAALWPLLYRANRDQIRDPGRIWPGQVLRIPRNISRDDLAEARRYAQERPAP

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26127; Mature: 26127

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVRAGISALVTIAVLAGCASHLPVYRIDALARLSAVKMMGAEKYAPPELASLQQAIVDG
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
DALMQSGEHELADSYYLLAIRKSEAVERSIAREREHERAMQVRSENERLARERQKALEEL
HHHHHCCCHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRELAEKEKEEKKRIERAPQPVRDKEKEKEVRSFPLHHTVKRGESLPQIAAQPDVYGDAA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHCCCCCCCHHH
LWPLLYRANRDQIRDPGRIWPGQVLRIPRNISRDDLAEARRYAQERPAP
HHHHHHHCCHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKVRAGISALVTIAVLAGCASHLPVYRIDALARLSAVKMMGAEKYAPPELASLQQAIVDG
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
DALMQSGEHELADSYYLLAIRKSEAVERSIAREREHERAMQVRSENERLARERQKALEEL
HHHHHCCCHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRELAEKEKEEKKRIERAPQPVRDKEKEKEVRSFPLHHTVKRGESLPQIAAQPDVYGDAA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHHHCCCCCCCHHH
LWPLLYRANRDQIRDPGRIWPGQVLRIPRNISRDDLAEARRYAQERPAP
HHHHHHHCCHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA