| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is icd [H]
Identifier: 39996565
GI number: 39996565
Start: 1606538
End: 1608760
Strand: Direct
Name: icd [H]
Synonym: GSU1465
Alternate gene names: 39996565
Gene position: 1606538-1608760 (Clockwise)
Preceding gene: 39996564
Following gene: 39996566
Centisome position: 42.12
GC content: 54.43
Gene sequence:
>2223_bases ATGGCAACGCACAAGATTATCTGGACGGAAATTGATGAAGCGCCCGCACTGGCAACGTACTCATTGCTCCCGATTGTTCA GGCATTTACCAAGGGAACGGGTGTAGAGGTTGAAACCAGGGATATCTCTCTTGCCGGCAGAATCATTGCCAACTTCCCGG AAAACCTGACTGACGCACAAAAAATTCCTGATTTCCTGACTCAACTGGGTGAGCTTACCCAGAGCCCTGAAGCGAATATT ATTAAGCTCCCCAACATCAGTGCCTCCGTTCCCCAGCTTAAAGAGGCCATCAAGGAGTTGCAGGATCAAGGGTACAATGT TCCTGATTACCCGGAAGATCCCAAGAACGATGCGGAAAAGGAGATCAAGGAGCGCTACGCCAAGGTGTTGGGCAGCGCCG TCAACCCTGTGCTGCGTGAAGGTAACTCCGACCGGCGCGCCCCGCTTTCGGTCAAGAATTTCTCCAAGAAAAATCCCCAC AAGCTGTCCCCTTGGAGTCCCGATTCCAAGGCTCATGTGGCTCACATGACCGGCGGCGATTTCTACGGTAATGAAAAATC TGTGACCGTGGGAAATGGTGGTGAATTCAAGATCGAGTTTGTTGATAAAAATGGGAAGGTGACAGCGTTCAAGGAAAAGC TGACCGCCTCCAAGGGCGAAATTCTTGATGGTACCTTCATGAGCAAGAAGGCTCTGTGCCAGTTCTATGCAGAGCAGATT GAAGATGCCAAGAATAAGGACCTGCTGCTGTCCCTGCACCTGAAGGCCACCATGATGAAGGTGTCCGATCCCATCATGTT CGGTCACGCTGTCTCTGTGTTCTACAAGGACGTGTTTGATAAGCACGCCGACACCTTTAAGCAACTGGGCGTCAATCCTA ATATGGGTCTGGGTGATCTTTACAAAAAAATTGAGTCGCTGCCGGCGGCCAAGCGGGCCGAGATCGAAGCTGATATCGCC GCTGTGTACGGTAAGCGTCCGAAGCTGGCGATGGTTGATTCTGACAAGGGCATCACCAACCTGCACGTGCCCAACGATAT CATTGTTGACGCATCCATGCCGGTTGTAGTGCGTGACGGTGGTAAGATGTGGGGCCCCGATGGCCAGCTGCATGACACCA AGGCAATGATTCCTGATCGCTGTTATGCTACGATGTATCGGGAAATCATTGAAGATTGCCAGAAGCATGGTGCCTTCAAC CCGGCAACCATGGGTTCGGTGCCCAACGTTGGTCTGATGGCCCAGAAGGCTGAAGAGTACGGCTCGCATCCCACCACCTT TGAAATTCCCGCCGACGGTACGGTACGCGTCGTTACTGCCGACGGTACGGTGCTGATGGAGCACCAGGTGGAGGCGGGCG ATATCTGGCGTATGTCCCGCGTGAAAGACATTCCGATCCAGGATTGGGTCAAGCTGGCTGTGAATCGTGCTCGGGCTACC GGCGCGCATGCCATTTTCTGGCTGGACAAGAGCAGGGCTCATGATGCGCAGGTTATCGCAAAGGTGGAAAATTATCTCAA GAATCACGATACCACGGGGCTTGAGATCAAAGTGCTCCCGCCGGTCGAAGCCATGCGTTACTCGCTGGAGCGTATCCGCA AGGGCCTGGATACCATTTCCGTAACCGGTAACGTTCTTCGGGACTACCTGACCGACCTCTTCCCCATCCTTGAGCTCGGT ACCAGTGCCAAAATGCTTTCCATCGTCCCTCTGCTGGCAGGTGGCGGTCTGTTCGAGACCGGTGCCGGCGGCTCGGCTCC GAAACACGTTCAGCAGTTCGTCAAGGAGGGGTACCTGCGGTGGGATTCTCTTGGTGAATTCTCGGCCCTCGCCGCTTCTC TCGAGCATCTCGGCACCAGCTTCAAGAACGACAAGGCTCTCGTTCTGGCTGAAACTCTCGACCAGGCAATCGCCAAGTTC CTTGACAACAACAAGTCGCCTGCTCGCAAAGTCGGCCAGATCGACAACCGTGGAAGCCATTTCTACCTCGCCATGTACTG GGCTGAGGCTTTGGCCGCTCAGACCAAGGATGCGGAGCTCCAGGCTAAATTCGCTCCCATTGCGAAGCAGCTCCAAGAGA ACGAGGCTAAAATCAACGAGGAACTGATCGGTGCCCAAGGTAAGCCGGTCGACATGGGTGGCTACTATCATCCGGATGCA GCGAAGGTTGCCAAGGCAATGCGCCCGAGCGCCGCTCTCAACGCGATTATCGACGCTATCTAG
Upstream 100 bases:
>100_bases AATGTAAGACTGTGGCGGCGGAAATGGCCATGGTGAAAATCTGTGGATTGGTTTGTCATTAGGCCTCAGGCGACGTTAGT AAAAAAACCAAGGAGAGAAT
Downstream 100 bases:
>100_bases TGACGTAGGAAGTACACATATCTGCTAAAGGAGGAAGATCAGTATGGCACGTAAGAAGATTGCTCTCATTGGTGGTGGCC AGATCGGTGGTGTGCTTGCT
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 740; Mature: 739
Protein sequence:
>740_residues MATHKIIWTEIDEAPALATYSLLPIVQAFTKGTGVEVETRDISLAGRIIANFPENLTDAQKIPDFLTQLGELTQSPEANI IKLPNISASVPQLKEAIKELQDQGYNVPDYPEDPKNDAEKEIKERYAKVLGSAVNPVLREGNSDRRAPLSVKNFSKKNPH KLSPWSPDSKAHVAHMTGGDFYGNEKSVTVGNGGEFKIEFVDKNGKVTAFKEKLTASKGEILDGTFMSKKALCQFYAEQI EDAKNKDLLLSLHLKATMMKVSDPIMFGHAVSVFYKDVFDKHADTFKQLGVNPNMGLGDLYKKIESLPAAKRAEIEADIA AVYGKRPKLAMVDSDKGITNLHVPNDIIVDASMPVVVRDGGKMWGPDGQLHDTKAMIPDRCYATMYREIIEDCQKHGAFN PATMGSVPNVGLMAQKAEEYGSHPTTFEIPADGTVRVVTADGTVLMEHQVEAGDIWRMSRVKDIPIQDWVKLAVNRARAT GAHAIFWLDKSRAHDAQVIAKVENYLKNHDTTGLEIKVLPPVEAMRYSLERIRKGLDTISVTGNVLRDYLTDLFPILELG TSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFVKEGYLRWDSLGEFSALAASLEHLGTSFKNDKALVLAETLDQAIAKF LDNNKSPARKVGQIDNRGSHFYLAMYWAEALAAQTKDAELQAKFAPIAKQLQENEAKINEELIGAQGKPVDMGGYYHPDA AKVAKAMRPSAALNAIIDAI
Sequences:
>Translated_740_residues MATHKIIWTEIDEAPALATYSLLPIVQAFTKGTGVEVETRDISLAGRIIANFPENLTDAQKIPDFLTQLGELTQSPEANI IKLPNISASVPQLKEAIKELQDQGYNVPDYPEDPKNDAEKEIKERYAKVLGSAVNPVLREGNSDRRAPLSVKNFSKKNPH KLSPWSPDSKAHVAHMTGGDFYGNEKSVTVGNGGEFKIEFVDKNGKVTAFKEKLTASKGEILDGTFMSKKALCQFYAEQI EDAKNKDLLLSLHLKATMMKVSDPIMFGHAVSVFYKDVFDKHADTFKQLGVNPNMGLGDLYKKIESLPAAKRAEIEADIA AVYGKRPKLAMVDSDKGITNLHVPNDIIVDASMPVVVRDGGKMWGPDGQLHDTKAMIPDRCYATMYREIIEDCQKHGAFN PATMGSVPNVGLMAQKAEEYGSHPTTFEIPADGTVRVVTADGTVLMEHQVEAGDIWRMSRVKDIPIQDWVKLAVNRARAT GAHAIFWLDKSRAHDAQVIAKVENYLKNHDTTGLEIKVLPPVEAMRYSLERIRKGLDTISVTGNVLRDYLTDLFPILELG TSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFVKEGYLRWDSLGEFSALAASLEHLGTSFKNDKALVLAETLDQAIAKF LDNNKSPARKVGQIDNRGSHFYLAMYWAEALAAQTKDAELQAKFAPIAKQLQENEAKINEELIGAQGKPVDMGGYYHPDA AKVAKAMRPSAALNAIIDAI >Mature_739_residues ATHKIIWTEIDEAPALATYSLLPIVQAFTKGTGVEVETRDISLAGRIIANFPENLTDAQKIPDFLTQLGELTQSPEANII KLPNISASVPQLKEAIKELQDQGYNVPDYPEDPKNDAEKEIKERYAKVLGSAVNPVLREGNSDRRAPLSVKNFSKKNPHK LSPWSPDSKAHVAHMTGGDFYGNEKSVTVGNGGEFKIEFVDKNGKVTAFKEKLTASKGEILDGTFMSKKALCQFYAEQIE DAKNKDLLLSLHLKATMMKVSDPIMFGHAVSVFYKDVFDKHADTFKQLGVNPNMGLGDLYKKIESLPAAKRAEIEADIAA VYGKRPKLAMVDSDKGITNLHVPNDIIVDASMPVVVRDGGKMWGPDGQLHDTKAMIPDRCYATMYREIIEDCQKHGAFNP ATMGSVPNVGLMAQKAEEYGSHPTTFEIPADGTVRVVTADGTVLMEHQVEAGDIWRMSRVKDIPIQDWVKLAVNRARATG AHAIFWLDKSRAHDAQVIAKVENYLKNHDTTGLEIKVLPPVEAMRYSLERIRKGLDTISVTGNVLRDYLTDLFPILELGT SAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFVKEGYLRWDSLGEFSALAASLEHLGTSFKNDKALVLAETLDQAIAKFL DNNKSPARKVGQIDNRGSHFYLAMYWAEALAAQTKDAELQAKFAPIAKQLQENEAKINEELIGAQGKPVDMGGYYHPDAA KVAKAMRPSAALNAIIDAI
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 81148; Mature: 81016
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATHKIIWTEIDEAPALATYSLLPIVQAFTKGTGVEVETRDISLAGRIIANFPENLTDAQ CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCHHHHH KIPDFLTQLGELTQSPEANIIKLPNISASVPQLKEAIKELQDQGYNVPDYPEDPKNDAEK HHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH EIKERYAKVLGSAVNPVLREGNSDRRAPLSVKNFSKKNPHKLSPWSPDSKAHVAHMTGGD HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEEECCCC FYGNEKSVTVGNGGEFKIEFVDKNGKVTAFKEKLTASKGEILDGTFMSKKALCQFYAEQI CCCCCCEEEECCCCEEEEEEECCCCCEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH EDAKNKDLLLSLHLKATMMKVSDPIMFGHAVSVFYKDVFDKHADTFKQLGVNPNMGLGDL HCCCCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH YKKIESLPAAKRAEIEADIAAVYGKRPKLAMVDSDKGITNLHVPNDIIVDASMPVVVRDG HHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCEEEECCCCEEECCC GKMWGPDGQLHDTKAMIPDRCYATMYREIIEDCQKHGAFNPATMGSVPNVGLMAQKAEEY CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHH GSHPTTFEIPADGTVRVVTADGTVLMEHQVEAGDIWRMSRVKDIPIQDWVKLAVNRARAT CCCCCEEEECCCCEEEEEECCCEEEEEECCCCCCEEEHHCCCCCCHHHHHHHHHHHHHCC GAHAIFWLDKSRAHDAQVIAKVENYLKNHDTTGLEIKVLPPVEAMRYSLERIRKGLDTIS CCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEE VTGNVLRDYLTDLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFVKEGYLR HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCEE WDSLGEFSALAASLEHLGTSFKNDKALVLAETLDQAIAKFLDNNKSPARKVGQIDNRGSH CCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCE FYLAMYWAEALAAQTKDAELQAKFAPIAKQLQENEAKINEELIGAQGKPVDMGGYYHPDA EEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCH AKVAKAMRPSAALNAIIDAI HHHHHHHCCHHHHHHHHHCC >Mature Secondary Structure ATHKIIWTEIDEAPALATYSLLPIVQAFTKGTGVEVETRDISLAGRIIANFPENLTDAQ CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCHHHHH KIPDFLTQLGELTQSPEANIIKLPNISASVPQLKEAIKELQDQGYNVPDYPEDPKNDAEK HHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH EIKERYAKVLGSAVNPVLREGNSDRRAPLSVKNFSKKNPHKLSPWSPDSKAHVAHMTGGD HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEEEECCCC FYGNEKSVTVGNGGEFKIEFVDKNGKVTAFKEKLTASKGEILDGTFMSKKALCQFYAEQI CCCCCCEEEECCCCEEEEEEECCCCCEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH EDAKNKDLLLSLHLKATMMKVSDPIMFGHAVSVFYKDVFDKHADTFKQLGVNPNMGLGDL HCCCCCCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH YKKIESLPAAKRAEIEADIAAVYGKRPKLAMVDSDKGITNLHVPNDIIVDASMPVVVRDG HHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCEEEECCCCEEECCC GKMWGPDGQLHDTKAMIPDRCYATMYREIIEDCQKHGAFNPATMGSVPNVGLMAQKAEEY CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHH GSHPTTFEIPADGTVRVVTADGTVLMEHQVEAGDIWRMSRVKDIPIQDWVKLAVNRARAT CCCCCEEEECCCCEEEEEECCCEEEEEECCCCCCEEEHHCCCCCCHHHHHHHHHHHHHCC GAHAIFWLDKSRAHDAQVIAKVENYLKNHDTTGLEIKVLPPVEAMRYSLERIRKGLDTIS CCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEE VTGNVLRDYLTDLFPILELGTSAKMLSIVPLLAGGGLFETGAGGSAPKHVQQFVKEGYLR HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCEE WDSLGEFSALAASLEHLGTSFKNDKALVLAETLDQAIAKFLDNNKSPARKVGQIDNRGSH CCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCE FYLAMYWAEALAAQTKDAELQAKFAPIAKQLQENEAKINEELIGAQGKPVDMGGYYHPDA EEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCH AKVAKAMRPSAALNAIIDAI HHHHHHHCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]