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The map label for this gene is ycjD [C]

Identifier: 39996471

GI number: 39996471

Start: 1497512

End: 1498039

Strand: Direct

Name: ycjD [C]

Synonym: GSU1369

Alternate gene names: 39996471

Gene position: 1497512-1498039 (Clockwise)

Preceding gene: 39996470

Following gene: 39996475

Centisome position: 39.26

GC content: 54.55

Gene sequence:

>528_bases
GTGAAGGACATACCCGGCGAATCAAGACCGAACGCAACGGTTGCTGACGCCGGGAGAAGTATCTGGTCGAGTATCGCAGA
GAATGGCGGTTATGACCCCCCTCAATCCCCCCTATTCCATAGGGGGGAAGCGAACGACGAGAGCAGGGGGGTGGTGTCCA
TGAAAACCTACACCAAGGCTTTGATACCGCGTGCACGGGACATGCGCTCGAACATGACGGAGCCGGAAAAGCGGATGTGG
TATCAGTGTTTGAAGCACCTGCCGCTACGTTTCCGCCGTCAACGCCCTGTTGGTCCCTACATTGTCGATTTCTACTGCGC
CGAGCTGAAACTGGTCATCGAAATTGACGGTGCCAGTCATGCCACCGACGAAGGGATTGTGTACGATGCGGGACGGACGG
CTTTTCTTGAAGGGCTTGGCTTGCGGGTTATTCGATTCGGAAATCATGAAGTCATGAACAACATTGAAGGCGTATTCGAG
AGCTTGCAAAAAGAAGTGCGACCCCCCTCAATCCCCCCTATTCCATAG

Upstream 100 bases:

>100_bases
CAAGGATCAACAGGCGCTCGCTCTCTGGTCCCATGACTTTTTCCGGGATGTTGCGAGACGCGTTCAGACTGATGAAGGAT
GAACTCGGCAATCTCAAGGA

Downstream 100 bases:

>100_bases
GGGGGAAGCGAACGGCGAGAGCAGGGAGGCAAAATCCCCCTTGTGCAACAGGGGGGACGGCGAGCGAAGCGAAGCAGGGG
GGTCTCGACACACCATCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKDIPGESRPNATVADAGRSIWSSIAENGGYDPPQSPLFHRGEANDESRGVVSMKTYTKALIPRARDMRSNMTEPEKRMW
YQCLKHLPLRFRRQRPVGPYIVDFYCAELKLVIEIDGASHATDEGIVYDAGRTAFLEGLGLRVIRFGNHEVMNNIEGVFE
SLQKEVRPPSIPPIP

Sequences:

>Translated_175_residues
MKDIPGESRPNATVADAGRSIWSSIAENGGYDPPQSPLFHRGEANDESRGVVSMKTYTKALIPRARDMRSNMTEPEKRMW
YQCLKHLPLRFRRQRPVGPYIVDFYCAELKLVIEIDGASHATDEGIVYDAGRTAFLEGLGLRVIRFGNHEVMNNIEGVFE
SLQKEVRPPSIPPIP
>Mature_175_residues
MKDIPGESRPNATVADAGRSIWSSIAENGGYDPPQSPLFHRGEANDESRGVVSMKTYTKALIPRARDMRSNMTEPEKRMW
YQCLKHLPLRFRRQRPVGPYIVDFYCAELKLVIEIDGASHATDEGIVYDAGRTAFLEGLGLRVIRFGNHEVMNNIEGVFE
SLQKEVRPPSIPPIP

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=110, Percent_Identity=41.8181818181818, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 19712; Mature: 19712

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDIPGESRPNATVADAGRSIWSSIAENGGYDPPQSPLFHRGEANDESRGVVSMKTYTKA
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHH
LIPRARDMRSNMTEPEKRMWYQCLKHLPLRFRRQRPVGPYIVDFYCAELKLVIEIDGASH
HHCCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHCCEEEEEEECCCCC
ATDEGIVYDAGRTAFLEGLGLRVIRFGNHEVMNNIEGVFESLQKEVRPPSIPPIP
CCCCCEEEECCCHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKDIPGESRPNATVADAGRSIWSSIAENGGYDPPQSPLFHRGEANDESRGVVSMKTYTKA
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHH
LIPRARDMRSNMTEPEKRMWYQCLKHLPLRFRRQRPVGPYIVDFYCAELKLVIEIDGASH
HHCCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHCCEEEEEEECCCCC
ATDEGIVYDAGRTAFLEGLGLRVIRFGNHEVMNNIEGVFESLQKEVRPPSIPPIP
CCCCCEEEECCCHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]