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The map label for this gene is ycaC [H]

Identifier: 39996445

GI number: 39996445

Start: 1469681

End: 1470334

Strand: Direct

Name: ycaC [H]

Synonym: GSU1343

Alternate gene names: 39996445

Gene position: 1469681-1470334 (Clockwise)

Preceding gene: 39996443

Following gene: 39996446

Centisome position: 38.53

GC content: 61.93

Gene sequence:

>654_bases
ATGAACTACACCGAACTTCTCAATCCCCAGAACTCCGCGGTCATCTTTATCGATTTCCAGCCCCAGATGACCTTCGGCGT
TGCCAATATCGACCGGCAAACCCTGTTCAACAACGTTATCCTGCTGGCCAAGGCGGCCAGGATCTTCAAGGTGCCGACCA
TCCTCACCACGGTGGAGACCAAGAGCTTCTCGGGCAATATGTGGCCCCAGCTCCTGGATATCTTCCCCGGCCAGGAACCG
ATCGAGCGCAGCTCCATGAACTCCTGGGAAGATGCCGCGTTCGTGGCGGCGGTGAAGGCCACCGGCAGGAAGAAACTGGT
CATGGCCGCTCTCTGGACCGAGGTCTGCCTGGCATTCCCGGCCCTGGGGGCCCTCAAGGCGGGCTATGACGTCTACGCCG
TGGAAGATGCCTCCGGCGGCACCACCCTGACCGCCCATAACGCTGCCATGCGCCGCGTCGAGCAGGCCGGCGCAGTCCCC
GTGACCTCACTGCAGGTGCTCCTCGAATATCAACGCGACTGGGCGCACAAGGAGACCTACAACGACGTCATCGCGGTGGT
GAAGGAGCATTGCGGGGCATACGGCCAAGGCGTGGAATATGCCTACACGATGGTTCATGGGGCGCCTCCCAGCAGGGGAG
GCGCAGGACACTGA

Upstream 100 bases:

>100_bases
ATAAATACTTTATTGTCTTCATTAGATTGAGGAATATCCTGATATCAGAGGTGTTGTTCGGCCCGGTGCCCGAATGCGGG
CCGACGAAAGGAGTCATGTC

Downstream 100 bases:

>100_bases
CATCATGGGAAACACAGCAACCGATAACGACCCCGTAACCGCCGCGGTCATGCCGGTTTTCACCCACATTCTCCGGCCGT
GGCTGGGAAAGGACACCTAA

Product: isochorismatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNYTELLNPQNSAVIFIDFQPQMTFGVANIDRQTLFNNVILLAKAARIFKVPTILTTVETKSFSGNMWPQLLDIFPGQEP
IERSSMNSWEDAAFVAAVKATGRKKLVMAALWTEVCLAFPALGALKAGYDVYAVEDASGGTTLTAHNAAMRRVEQAGAVP
VTSLQVLLEYQRDWAHKETYNDVIAVVKEHCGAYGQGVEYAYTMVHGAPPSRGGAGH

Sequences:

>Translated_217_residues
MNYTELLNPQNSAVIFIDFQPQMTFGVANIDRQTLFNNVILLAKAARIFKVPTILTTVETKSFSGNMWPQLLDIFPGQEP
IERSSMNSWEDAAFVAAVKATGRKKLVMAALWTEVCLAFPALGALKAGYDVYAVEDASGGTTLTAHNAAMRRVEQAGAVP
VTSLQVLLEYQRDWAHKETYNDVIAVVKEHCGAYGQGVEYAYTMVHGAPPSRGGAGH
>Mature_217_residues
MNYTELLNPQNSAVIFIDFQPQMTFGVANIDRQTLFNNVILLAKAARIFKVPTILTTVETKSFSGNMWPQLLDIFPGQEP
IERSSMNSWEDAAFVAAVKATGRKKLVMAALWTEVCLAFPALGALKAGYDVYAVEDASGGTTLTAHNAAMRRVEQAGAVP
VTSLQVLLEYQRDWAHKETYNDVIAVVKEHCGAYGQGVEYAYTMVHGAPPSRGGAGH

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=169, Percent_Identity=40.8284023668639, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 23669; Mature: 23669

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYTELLNPQNSAVIFIDFQPQMTFGVANIDRQTLFNNVILLAKAARIFKVPTILTTVET
CCHHHHCCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEEC
KSFSGNMWPQLLDIFPGQEPIERSSMNSWEDAAFVAAVKATGRKKLVMAALWTEVCLAFP
CCCCCCCCHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ALGALKAGYDVYAVEDASGGTTLTAHNAAMRRVEQAGAVPVTSLQVLLEYQRDWAHKETY
HHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
NDVIAVVKEHCGAYGQGVEYAYTMVHGAPPSRGGAGH
HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MNYTELLNPQNSAVIFIDFQPQMTFGVANIDRQTLFNNVILLAKAARIFKVPTILTTVET
CCHHHHCCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEEC
KSFSGNMWPQLLDIFPGQEPIERSSMNSWEDAAFVAAVKATGRKKLVMAALWTEVCLAFP
CCCCCCCCHHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ALGALKAGYDVYAVEDASGGTTLTAHNAAMRRVEQAGAVPVTSLQVLLEYQRDWAHKETY
HHHHHHCCCEEEEEECCCCCCEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
NDVIAVVKEHCGAYGQGVEYAYTMVHGAPPSRGGAGH
HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]