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The map label for this gene is ygdQ [C]

Identifier: 39996438

GI number: 39996438

Start: 1463178

End: 1463915

Strand: Reverse

Name: ygdQ [C]

Synonym: GSU1336

Alternate gene names: 39996438

Gene position: 1463915-1463178 (Counterclockwise)

Preceding gene: 39996444

Following gene: 39996436

Centisome position: 38.38

GC content: 60.7

Gene sequence:

>738_bases
ATGGAATTATTGACCGACCCCCAGGCCTGGCTTGCCCTGGCCACCCTCACCGCCCTGGAGATCGTCCTGGGCATCGACAA
CATCATCTTCATCTCAATCCTTTCATCCAAACTGCCGGCGGAACAGCAGGAAAAGGCCCGCCTCACCGGCCTGGGCCTGG
CCATGTTCACGCGGGTGGCGCTGCTGTTCTCCCTCGCCTGGCTCATGGGACTCACGGAGCCGCTGCTGTCGGTGCTGGAA
ACGGATATTTCCGGCCGCGATCTGATCCTGATCGCCGGCGGCCTCTTCCTCCTGGCCAAGAGCACCATGGAGATCCACGA
CAAGCTGGAAGGGGCCGAAAGCCACGGTACGGTCAAGGCAGCGGCGTCCTTCGGGGCCATCATCTTCCAGATCCTTCTGC
TGGACATCGTGTTCTCTCTCGACTCGATCATCACCGCCATCGGCATGGCCAACCAGCTGGCGGTCATGGTGGCGGCCGTA
GTCATCGCCGTTGGGTTCATGATGCTCTTCGCCGGCAAGATCAGCGCCTTCGTGGATTCGCACCCGACCATCAAGATGCT
TGCCCTCTCCTTCCTCATCCTGATCGGGGTGGCGCTCATCGGGGACGGCCTCGACATGCACATTCCCAAGGGGTACATCT
ACTTTGCCATGGCCTTCTCCGTGGGGGTCGAGATGCTCAACATGAAGATGCGTGCGAAAGGAAAACCGGTCAAGCTGCAC
CAGCCCTACACGGAGTGA

Upstream 100 bases:

>100_bases
TTTGTTTCCGGCAGGCAAGACCTTTACCTGACGAGCTCACAGAGCCGGAGGTAGAGGTTTTTTTGTGCCCCGGCGTTATT
GACAAAGGAGACATGGATCA

Downstream 100 bases:

>100_bases
TGCCGACGTCCCGTCGCTCCGGCAGATACTTTTCGCTTGACAGCAAAGGTGCCGCCGGTACACTGTTAGCGATTCGGGCG
TTAAATCGGCATGTTACCTC

Product: TerC family membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MELLTDPQAWLALATLTALEIVLGIDNIIFISILSSKLPAEQQEKARLTGLGLAMFTRVALLFSLAWLMGLTEPLLSVLE
TDISGRDLILIAGGLFLLAKSTMEIHDKLEGAESHGTVKAAASFGAIIFQILLLDIVFSLDSIITAIGMANQLAVMVAAV
VIAVGFMMLFAGKISAFVDSHPTIKMLALSFLILIGVALIGDGLDMHIPKGYIYFAMAFSVGVEMLNMKMRAKGKPVKLH
QPYTE

Sequences:

>Translated_245_residues
MELLTDPQAWLALATLTALEIVLGIDNIIFISILSSKLPAEQQEKARLTGLGLAMFTRVALLFSLAWLMGLTEPLLSVLE
TDISGRDLILIAGGLFLLAKSTMEIHDKLEGAESHGTVKAAASFGAIIFQILLLDIVFSLDSIITAIGMANQLAVMVAAV
VIAVGFMMLFAGKISAFVDSHPTIKMLALSFLILIGVALIGDGLDMHIPKGYIYFAMAFSVGVEMLNMKMRAKGKPVKLH
QPYTE
>Mature_245_residues
MELLTDPQAWLALATLTALEIVLGIDNIIFISILSSKLPAEQQEKARLTGLGLAMFTRVALLFSLAWLMGLTEPLLSVLE
TDISGRDLILIAGGLFLLAKSTMEIHDKLEGAESHGTVKAAASFGAIIFQILLLDIVFSLDSIITAIGMANQLAVMVAAV
VIAVGFMMLFAGKISAFVDSHPTIKMLALSFLILIGVALIGDGLDMHIPKGYIYFAMAFSVGVEMLNMKMRAKGKPVKLH
QPYTE

Specific function: Unknown

COG id: COG0861

COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0053 family [H]

Homologues:

Organism=Escherichia coli, GI1789197, Length=234, Percent_Identity=56.8376068376068, Blast_Score=242, Evalue=2e-65,
Organism=Escherichia coli, GI1788119, Length=234, Percent_Identity=50.4273504273504, Blast_Score=238, Evalue=3e-64,
Organism=Escherichia coli, GI87082033, Length=229, Percent_Identity=50.6550218340611, Blast_Score=222, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005496 [H]

Pfam domain/function: PF03741 TerC [H]

EC number: NA

Molecular weight: Translated: 26348; Mature: 26348

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLTDPQAWLALATLTALEIVLGIDNIIFISILSSKLPAEQQEKARLTGLGLAMFTRVA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LLFSLAWLMGLTEPLLSVLETDISGRDLILIAGGLFLLAKSTMEIHDKLEGAESHGTVKA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHH
AASFGAIIFQILLLDIVFSLDSIITAIGMANQLAVMVAAVVIAVGFMMLFAGKISAFVDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HPTIKMLALSFLILIGVALIGDGLDMHIPKGYIYFAMAFSVGVEMLNMKMRAKGKPVKLH
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
QPYTE
CCCCC
>Mature Secondary Structure
MELLTDPQAWLALATLTALEIVLGIDNIIFISILSSKLPAEQQEKARLTGLGLAMFTRVA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LLFSLAWLMGLTEPLLSVLETDISGRDLILIAGGLFLLAKSTMEIHDKLEGAESHGTVKA
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHH
AASFGAIIFQILLLDIVFSLDSIITAIGMANQLAVMVAAVVIAVGFMMLFAGKISAFVDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HPTIKMLALSFLILIGVALIGDGLDMHIPKGYIYFAMAFSVGVEMLNMKMRAKGKPVKLH
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
QPYTE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]