| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is arcB [H]
Identifier: 39996404
GI number: 39996404
Start: 1423689
End: 1426196
Strand: Direct
Name: arcB [H]
Synonym: GSU1302
Alternate gene names: 39996404
Gene position: 1423689-1426196 (Clockwise)
Preceding gene: 39996403
Following gene: 39996405
Centisome position: 37.33
GC content: 61.32
Gene sequence:
>2508_bases ATGACCCCCAAGAAGCATGCCCAATCGCTCAAAAACAGACTTCTGAGGATAAACCTGCTGCTGCTTTGTGTGGCATCCCT TGCGATTGTCCTGGTAGTCAATGTGGCCCAGAAACAGCTTGCACTCATTGATGCCGGCAGGGATGCCGAACGAATCCTTG CGCGCTACCTTGCTATCCATACGTACTTCAATCAGCAGCTCAAGCCACGACTTCTCGCTCTGACGAAACCGCTACGCGAC AAGGAGTACTTCGATCCGGCCTGGATGTCCTCTACCTATGCGGTCCGGGAGATCGACAAGATATTTCAGACCCGACACGG CAAGGGGTATTACTATAAGGAGTGCGCCATCAACGCCCGGAGTCCCCTGAACGAGGCCGACTCCTTCGAGCGTGCGTTCC TGGAGCGGGCCGGCCGTGACGCGGCGGTGACCTCGTTCAATGGCGTGCGGAAGATCGACGGCAAACCGTTTTTCGTTTCC ATGGTCCGGGGTGAAACCATGGAAAAGCCGTGCCTGCTCTGCCATAGCAGCCCGGAGAAGGCCCCCGCCGGACTTGTCCA CAACTATGGAGCCGAGCGGAGTTTTGGCCGTCACGAACATGAGCTTGTGTCGGCTGTCTCAATCCGCATCCCCCTGGCTT CGACCTATGCCGAGGCCAACAGCTTTTCCCTTAAGCTGTCGGCGCTGCTCTTCGGTATCATTGCCGCTCTTTTCGCCGTC CAGAACCGGATTTTCGAGCGTCTCGTCCTGAAACCCCTGGCCGTTGTCACCGAGGGGGCCCGTCGGATTGCCCACGACCG CCGCTATCTCGGAGAGCAGCTTCCCCTCGATCACGGCCGCGAAATGAACGAACTCGCCGCATCATTCAATGTGATGTCGA CCGAGCTCCATACCTTCATCCACAATCTGGAGGAAAAGGTCGAGGAAAAGACCGCAGAGCTGATCCTGGCGCGCAAGGAT GCCGAAGAGGCGAGCCGCGCTAAGAGTGATTTCCTGGCAACCATGAGCCATGAGATCCGCACTCCCATGAATGCCATCAT CGGCATCAACCAGCTCCTGGTCGACACTCCGCTTACTCAGGAGCAACGCCGCCTGTTGGATGACTCGACCACTGCCGCCG AGTCGTTGCTGATCATCATCAACGATATCCTTGACTTGTCGCGGGTGGAGGCCCGGCGCCTGGAGCTGTTTCCAGAGGCG GTCGAGCTGCGCTCCTTTGTCGAATCGCTCCGGCGCCTGTTCGCCGTGCAGGCAACGCGCAAGCAGATCAGCCTCAGTGT CAGCGTGGGCGAGGGGACGCCCCGGTTCGTCTGGTGCGATCCGGCTCGCCTCCGTCAGATACTGACCAATCTTCTGTCCA ATGCCCTCAAGTTTACGCCGACGGGCGGCGTGGTCACCATGGTCGCAGACCAGGCTCCCGCCGGTGCCGGACTGGTCTTC ACCGTCAGCGATACCGGCATCGGGATCGATAAGGCCAAGCAGGAGAGTATCTTCGAGATGTTCCGCCAGGCTGATTCCTC GACTACTCGCATCTACGGCGGAACCGGCCTCGGTCTCGCCATTACGAAGGGGCTCGTGGAATTGATGGGAGGAACGATCG CCGTGGAGAGCGAACCGGGCAGTGGCGCCACGTTCAGCGTGTGTCTCCCCCTGGAGCCGGCTGATGGCCCGCAGTTCCAC GACTGCGCCGCCGAAAACCAGGAGCAGGACAGGGAGCTGCCGTCCCTTGAGGTTCTCCTGGTTGAGGACAATGATTTGAA CCGGACCGTGGCCGTCGGGCTCCTCACGGCCCTCAACCAGCGGGTGACCGCCGTCACCAACGGCCGGGAGGCCATCGACG TCCTCCGTGACCGGGATTTCGAACTGGTGTTCATGGATATTTCGATGCCCGAAATGGACGGCATCGAGGCCACCTGGGCG ATTCGCCGGGGAGAGGCCGGTGAGCGGGCGCGGTCGACGCCCATCGTCTTCCTCACGGCCCATGCTCTGGCGGCCGACCG TGAGCGGTGCCTGGAAGCGGACGTGACCGGCTATCTTACCAAACCTCTGCTGCGGGAAGAGCTTCGCAGGATGATCCTTT TATGTGCCGAGGGTGAGCAGATGCATCCGCCCGTCGGAACGACTCCACCGTCAGGCGATCCTGCGCGCTTCTTCCCGTTC GATCTGGAGTTTCAGCGGAGACAGTTCACCGAAGCCGGTCTTGACCACGCAGTGGAAGAACTCTTGTCCACGTTTGCCCA GTCAGCGTTCAAACTGTGCGACCGGATCGACGAATGCCTCGCTGCCGGCGACTATGCCGGCGCCGCCGCTGCTGCTCACA CCCTCAAGGGAGCTGCGGCAACGGTAGGGGCACCTCTCGTTGCCAGCTGCGCCGCCAAGGTGGAGGCGGCGGTACGGTCG AGCGACGGTGCCGCTGCCTCCCGCCGTCTCAGCCGATTGAGAGGAGAAGTCACCCGTGCGCAGGCCGCGATTATCCCCGC GTCCGATCACGCGCGCTCGTGGCATTGA
Upstream 100 bases:
>100_bases TTATTAAATACATCCCTTCGGAAACACCGCTCTCATTTCCGGCTTGTATGGTGTTCAATGGGGGTATCTCAGGGTTCAGG TGAAAGAGAAACGTATCGAG
Downstream 100 bases:
>100_bases AATGTGCCGAGCCCGCTGCTCGTGATGGCACTCCGGCACGGCCGGAGAGCCATTTGTCTTTTCGGGCAACGGAGTTTCAT GGATTCTGAGGCTCGTTCGC
Product: sensor histidine kinase/response regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 835; Mature: 834
Protein sequence:
>835_residues MTPKKHAQSLKNRLLRINLLLLCVASLAIVLVVNVAQKQLALIDAGRDAERILARYLAIHTYFNQQLKPRLLALTKPLRD KEYFDPAWMSSTYAVREIDKIFQTRHGKGYYYKECAINARSPLNEADSFERAFLERAGRDAAVTSFNGVRKIDGKPFFVS MVRGETMEKPCLLCHSSPEKAPAGLVHNYGAERSFGRHEHELVSAVSIRIPLASTYAEANSFSLKLSALLFGIIAALFAV QNRIFERLVLKPLAVVTEGARRIAHDRRYLGEQLPLDHGREMNELAASFNVMSTELHTFIHNLEEKVEEKTAELILARKD AEEASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPLTQEQRRLLDDSTTAAESLLIIINDILDLSRVEARRLELFPEA VELRSFVESLRRLFAVQATRKQISLSVSVGEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVF TVSDTGIGIDKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLPLEPADGPQFH DCAAENQEQDRELPSLEVLLVEDNDLNRTVAVGLLTALNQRVTAVTNGREAIDVLRDRDFELVFMDISMPEMDGIEATWA IRRGEAGERARSTPIVFLTAHALAADRERCLEADVTGYLTKPLLREELRRMILLCAEGEQMHPPVGTTPPSGDPARFFPF DLEFQRRQFTEAGLDHAVEELLSTFAQSAFKLCDRIDECLAAGDYAGAAAAAHTLKGAAATVGAPLVASCAAKVEAAVRS SDGAAASRRLSRLRGEVTRAQAAIIPASDHARSWH
Sequences:
>Translated_835_residues MTPKKHAQSLKNRLLRINLLLLCVASLAIVLVVNVAQKQLALIDAGRDAERILARYLAIHTYFNQQLKPRLLALTKPLRD KEYFDPAWMSSTYAVREIDKIFQTRHGKGYYYKECAINARSPLNEADSFERAFLERAGRDAAVTSFNGVRKIDGKPFFVS MVRGETMEKPCLLCHSSPEKAPAGLVHNYGAERSFGRHEHELVSAVSIRIPLASTYAEANSFSLKLSALLFGIIAALFAV QNRIFERLVLKPLAVVTEGARRIAHDRRYLGEQLPLDHGREMNELAASFNVMSTELHTFIHNLEEKVEEKTAELILARKD AEEASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPLTQEQRRLLDDSTTAAESLLIIINDILDLSRVEARRLELFPEA VELRSFVESLRRLFAVQATRKQISLSVSVGEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVF TVSDTGIGIDKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLPLEPADGPQFH DCAAENQEQDRELPSLEVLLVEDNDLNRTVAVGLLTALNQRVTAVTNGREAIDVLRDRDFELVFMDISMPEMDGIEATWA IRRGEAGERARSTPIVFLTAHALAADRERCLEADVTGYLTKPLLREELRRMILLCAEGEQMHPPVGTTPPSGDPARFFPF DLEFQRRQFTEAGLDHAVEELLSTFAQSAFKLCDRIDECLAAGDYAGAAAAAHTLKGAAATVGAPLVASCAAKVEAAVRS SDGAAASRRLSRLRGEVTRAQAAIIPASDHARSWH >Mature_834_residues TPKKHAQSLKNRLLRINLLLLCVASLAIVLVVNVAQKQLALIDAGRDAERILARYLAIHTYFNQQLKPRLLALTKPLRDK EYFDPAWMSSTYAVREIDKIFQTRHGKGYYYKECAINARSPLNEADSFERAFLERAGRDAAVTSFNGVRKIDGKPFFVSM VRGETMEKPCLLCHSSPEKAPAGLVHNYGAERSFGRHEHELVSAVSIRIPLASTYAEANSFSLKLSALLFGIIAALFAVQ NRIFERLVLKPLAVVTEGARRIAHDRRYLGEQLPLDHGREMNELAASFNVMSTELHTFIHNLEEKVEEKTAELILARKDA EEASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPLTQEQRRLLDDSTTAAESLLIIINDILDLSRVEARRLELFPEAV ELRSFVESLRRLFAVQATRKQISLSVSVGEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFT VSDTGIGIDKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLPLEPADGPQFHD CAAENQEQDRELPSLEVLLVEDNDLNRTVAVGLLTALNQRVTAVTNGREAIDVLRDRDFELVFMDISMPEMDGIEATWAI RRGEAGERARSTPIVFLTAHALAADRERCLEADVTGYLTKPLLREELRRMILLCAEGEQMHPPVGTTPPSGDPARFFPFD LEFQRRQFTEAGLDHAVEELLSTFAQSAFKLCDRIDECLAAGDYAGAAAAAHTLKGAAATVGAPLVASCAAKVEAAVRSS DGAAASRRLSRLRGEVTRAQAAIIPASDHARSWH
Specific function: Member of the two-component regulatory system ArcB/ArcA. Sensor-regulator protein for anaerobic repression of the arc modulon. Activates ArcA via a four-step phosphorelay. ArcB can also dephosphorylate ArcA by a reverse phosphorelay involving His- 717 and
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI48994928, Length=476, Percent_Identity=33.4033613445378, Blast_Score=238, Evalue=1e-63, Organism=Escherichia coli, GI87081816, Length=628, Percent_Identity=30.2547770700637, Blast_Score=231, Evalue=2e-61, Organism=Escherichia coli, GI1788713, Length=549, Percent_Identity=30.6010928961749, Blast_Score=210, Evalue=3e-55, Organism=Escherichia coli, GI1789149, Length=305, Percent_Identity=40.9836065573771, Blast_Score=201, Evalue=2e-52, Organism=Escherichia coli, GI145693157, Length=254, Percent_Identity=40.9448818897638, Blast_Score=169, Evalue=7e-43, Organism=Escherichia coli, GI1790436, Length=274, Percent_Identity=28.4671532846715, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1786600, Length=242, Percent_Identity=28.5123966942149, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI1788393, Length=240, Percent_Identity=30.4166666666667, Blast_Score=96, Evalue=8e-21, Organism=Escherichia coli, GI1786912, Length=246, Percent_Identity=27.6422764227642, Blast_Score=89, Evalue=9e-19, Organism=Escherichia coli, GI1790346, Length=226, Percent_Identity=29.646017699115, Blast_Score=88, Evalue=3e-18, Organism=Escherichia coli, GI1788549, Length=295, Percent_Identity=28.135593220339, Blast_Score=83, Evalue=8e-17, Organism=Escherichia coli, GI87082128, Length=227, Percent_Identity=28.6343612334802, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1786783, Length=232, Percent_Identity=29.7413793103448, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1790861, Length=223, Percent_Identity=30.0448430493274, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1787894, Length=302, Percent_Identity=25.4966887417219, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788279, Length=223, Percent_Identity=25.5605381165919, Blast_Score=73, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6322044, Length=137, Percent_Identity=31.3868613138686, Blast_Score=80, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR008207 - InterPro: IPR014409 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF01627 Hpt; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 91795; Mature: 91664
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS50885 HAMP ; PS50894 HPT ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPKKHAQSLKNRLLRINLLLLCVASLAIVLVVNVAQKQLALIDAGRDAERILARYLAIH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH TYFNQQLKPRLLALTKPLRDKEYFDPAWMSSTYAVREIDKIFQTRHGKGYYYKECAINAR HHHHHHHCHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC SPLNEADSFERAFLERAGRDAAVTSFNGVRKIDGKPFFVSMVRGETMEKPCLLCHSSPEK CCCCHHHHHHHHHHHHCCCCCEEECCCCCEECCCCCEEEEEECCCCCCCCEEEECCCCCC APAGLVHNYGAERSFGRHEHELVSAVSIRIPLASTYAEANSFSLKLSALLFGIIAALFAV CCCCHHHHCCCCCCCCCHHHHHHHHHHEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHH QNRIFERLVLKPLAVVTEGARRIAHDRRYLGEQLPLDHGREMNELAASFNVMSTELHTFI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH HNLEEKVEEKTAELILARKDAEEASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPLTQ HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCH EQRRLLDDSTTAAESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATR HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQISLSVSVGEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVF HEEEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCCCCCEEE TVSDTGIGIDKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPG EEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCEEEEECCCC SGATFSVCLPLEPADGPQFHDCAAENQEQDRELPSLEVLLVEDNDLNRTVAVGLLTALNQ CCCEEEEEEECCCCCCCCCHHHHHCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHH RVTAVTNGREAIDVLRDRDFELVFMDISMPEMDGIEATWAIRRGEAGERARSTPIVFLTA HHEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCHHCCCCEEEEEH HALAADRERCLEADVTGYLTKPLLREELRRMILLCAEGEQMHPPVGTTPPSGDPARFFPF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCC DLEFQRRQFTEAGLDHAVEELLSTFAQSAFKLCDRIDECLAAGDYAGAAAAAHTLKGAAA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH TVGAPLVASCAAKVEAAVRSSDGAAASRRLSRLRGEVTRAQAAIIPASDHARSWH HHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCC >Mature Secondary Structure TPKKHAQSLKNRLLRINLLLLCVASLAIVLVVNVAQKQLALIDAGRDAERILARYLAIH CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH TYFNQQLKPRLLALTKPLRDKEYFDPAWMSSTYAVREIDKIFQTRHGKGYYYKECAINAR HHHHHHHCHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC SPLNEADSFERAFLERAGRDAAVTSFNGVRKIDGKPFFVSMVRGETMEKPCLLCHSSPEK CCCCHHHHHHHHHHHHCCCCCEEECCCCCEECCCCCEEEEEECCCCCCCCEEEECCCCCC APAGLVHNYGAERSFGRHEHELVSAVSIRIPLASTYAEANSFSLKLSALLFGIIAALFAV CCCCHHHHCCCCCCCCCHHHHHHHHHHEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHH QNRIFERLVLKPLAVVTEGARRIAHDRRYLGEQLPLDHGREMNELAASFNVMSTELHTFI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH HNLEEKVEEKTAELILARKDAEEASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPLTQ HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCH EQRRLLDDSTTAAESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATR HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQISLSVSVGEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVF HEEEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCCCCCEEE TVSDTGIGIDKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPG EEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCEEEEECCCC SGATFSVCLPLEPADGPQFHDCAAENQEQDRELPSLEVLLVEDNDLNRTVAVGLLTALNQ CCCEEEEEEECCCCCCCCCHHHHHCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHH RVTAVTNGREAIDVLRDRDFELVFMDISMPEMDGIEATWAIRRGEAGERARSTPIVFLTA HHEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCHHCCCCEEEEEH HALAADRERCLEADVTGYLTKPLLREELRRMILLCAEGEQMHPPVGTTPPSGDPARFFPF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCC DLEFQRRQFTEAGLDHAVEELLSTFAQSAFKLCDRIDECLAAGDYAGAAAAAHTLKGAAA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH TVGAPLVASCAAKVEAAVRSSDGAAASRRLSRLRGEVTRAQAAIIPASDHARSWH HHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]