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The map label for this gene is 39996358

Identifier: 39996358

GI number: 39996358

Start: 1369123

End: 1369746

Strand: Direct

Name: 39996358

Synonym: GSU1256

Alternate gene names: NA

Gene position: 1369123-1369746 (Clockwise)

Preceding gene: 39996357

Following gene: 39996359

Centisome position: 35.9

GC content: 59.13

Gene sequence:

>624_bases
GTGAGAATCACGTTGTCAGCACCTGTCATTGCGCTTTGCCTGTTGCTTGCGGCAACATTACTGCCATGTACCGCCGCGGC
CGCGCCCCAGTCGCCGCAGGGAACCGCTCTCGACCGCAGGACCGATGAAGCGGCCCGCGCCTATTTTACCGACCTCAAGC
TGACAACCCACGAAGGCAAGGTCGTCCGCTTCTATACGGACATCCTTAAGGACAGGGTTGTTCTGATTCACTTTTTCTAT
ACCAATTGCAAGACCGTGGCCACGCTCCAGACCAAGGTTCTCTCGGACCTGCAGCCGCTGCTGGGCGATCGCCTCGGCAA
AGATATCTTTCTGGTGTCGATCAGCGTGGACCCGGCCCGCGACACCCTCGAGCATACCCGCGCCTATGCCCGGGCGTTTG
CTCCCCGCCCGGGCTGGACCTTTCTGACCGGTTCCAAGGTGAACCTGGACTGGGTGAACTACAAACTGGGCAACTACAAG
GAGAATCCCGAAGAGCACGAGACGTTCTTTCTCCTCGGGAACCTCAGGACCGGCCACTGGATCAAGAATAAACCGGAGAC
CTCGGCGCGAACCCTGGCGGAGCACCTGATCCAACTGGCCGACGAAAAACAGGTGAAGCGATGA

Upstream 100 bases:

>100_bases
CCTGGCAACGGTTTTACGGTTTCCCGTCGGCCGACAAGATTCTTTCGTCCCTCACTGAACTGCAGAAGGCGCGTCACCAT
TGAACCGCCGGGAGAACCAC

Downstream 100 bases:

>100_bases
TCGGCATGACGGTACGGACGGCGAGATCATGCCTGACCTCACTGGCGCTGCTGCTCCTGGCTTTTGCGGCCGGAGCACTG
GCTCCCCTGCAGCAGTCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: SCO1/SenC Family Protein; Sco1/SenC Family Protein; Electron Transporter SCO1/SenC Family Protein/Cytochrome C; Electron Transport /Senc; Secreted Protein

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MRITLSAPVIALCLLLAATLLPCTAAAAPQSPQGTALDRRTDEAARAYFTDLKLTTHEGKVVRFYTDILKDRVVLIHFFY
TNCKTVATLQTKVLSDLQPLLGDRLGKDIFLVSISVDPARDTLEHTRAYARAFAPRPGWTFLTGSKVNLDWVNYKLGNYK
ENPEEHETFFLLGNLRTGHWIKNKPETSARTLAEHLIQLADEKQVKR

Sequences:

>Translated_207_residues
MRITLSAPVIALCLLLAATLLPCTAAAAPQSPQGTALDRRTDEAARAYFTDLKLTTHEGKVVRFYTDILKDRVVLIHFFY
TNCKTVATLQTKVLSDLQPLLGDRLGKDIFLVSISVDPARDTLEHTRAYARAFAPRPGWTFLTGSKVNLDWVNYKLGNYK
ENPEEHETFFLLGNLRTGHWIKNKPETSARTLAEHLIQLADEKQVKR
>Mature_207_residues
MRITLSAPVIALCLLLAATLLPCTAAAAPQSPQGTALDRRTDEAARAYFTDLKLTTHEGKVVRFYTDILKDRVVLIHFFY
TNCKTVATLQTKVLSDLQPLLGDRLGKDIFLVSISVDPARDTLEHTRAYARAFAPRPGWTFLTGSKVNLDWVNYKLGNYK
ENPEEHETFFLLGNLRTGHWIKNKPETSARTLAEHLIQLADEKQVKR

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23323; Mature: 23323

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITLSAPVIALCLLLAATLLPCTAAAAPQSPQGTALDRRTDEAARAYFTDLKLTTHEGK
CEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCC
VVRFYTDILKDRVVLIHFFYTNCKTVATLQTKVLSDLQPLLGDRLGKDIFLVSISVDPAR
EEHHHHHHHHCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCH
DTLEHTRAYARAFAPRPGWTFLTGSKVNLDWVNYKLGNYKENPEEHETFFLLGNLRTGHW
HHHHHHHHHHHHCCCCCCCEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCC
IKNKPETSARTLAEHLIQLADEKQVKR
CCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRITLSAPVIALCLLLAATLLPCTAAAAPQSPQGTALDRRTDEAARAYFTDLKLTTHEGK
CEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEECCCC
VVRFYTDILKDRVVLIHFFYTNCKTVATLQTKVLSDLQPLLGDRLGKDIFLVSISVDPAR
EEHHHHHHHHCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCH
DTLEHTRAYARAFAPRPGWTFLTGSKVNLDWVNYKLGNYKENPEEHETFFLLGNLRTGHW
HHHHHHHHHHHHCCCCCCCEEEECCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCC
IKNKPETSARTLAEHLIQLADEKQVKR
CCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA