Click here to switch to the map view.

The map label for this gene is 39996265

Identifier: 39996265

GI number: 39996265

Start: 1267101

End: 1268258

Strand: Direct

Name: 39996265

Synonym: GSU1163

Alternate gene names: NA

Gene position: 1267101-1268258 (Clockwise)

Preceding gene: 39996264

Following gene: 39996266

Centisome position: 33.22

GC content: 61.74

Gene sequence:

>1158_bases
ATGTTCATCATCAAGCTCCTCATCCGCAACGCCTTTCGCCACAAGCTCCGGACGGGGCTTACCATCGTGGGGGTTGCCAT
CGCCATTGTGGCCTTCGGCCTGTTGCGGACACTGGTGGACCTCTGGTACGCGGGGGTTGAGGCGTCCTCGGCCTCCCGTC
TCATTACGCGCAACTCCATCTCCCTCGTTTTCCCCCTCCCGATTTCCTACAAAGACCGGATCCGCCAAGTGCCGGGGGTT
CGCGACGTTTCCTGGGGCAACTGGTTCGGCGGCATCTACAAGGAAGAGAAGAATTTTTTCCCCAGTTTTGCCGTAGAGCC
CCGCAGTTTCCTGGCCATGTACCCGGAGTACCGGGTCGACCCCGTGGAGTTGAAGTCATTCCTCCTGGACCGGAAAGGGG
CCATGGTGGGAGCCAAGACCGCCGAGCGTTTCGGCTGGAAGGTGGGGGATCAGGTGATGCTCCGGGGGACCATCTTCCCC
GGGCAATGGGAGTTTGTCATCCGGGGCATCTACCATGGGGCAGCAAAGAGCACCGATGAAACCCAGTTTTTCTTCCACTG
GGATTACCTGAACGAGGTCATGCGGCGAACGGTGCCCCGGCGGGCCGATCAGGCGGGGTATTACATCATCGAGCTGAAAA
AGCCCGATCAGGCGGCGGAGGTCTCCCTGGCCGTGGATGCCACCTTCAGGAATTCCCTGGCAGAGACCCTGACCGAGACG
GAACGGGCATTCCAGATGAGCTTCGTGTCCATGACCGAGGCCATCGTCATCGCCATCCAGATCGTCTCCTACGTGGTAAT
CGTCATCATCATGGTCGTGGCGGCAAACACCATGGCCATGACGGCCCGGGAGCGGATTCCCGAGTACGCCACCCTCAAGA
CCCTCGGCTTCGGCGGGCTCCACATCGCGGGAGTGATCTTCGGCGAATCGCTCGTCATCGCCATGGCGGGCGGAGTGACC
GGGGTAATCCTCACTTTTCCCGCGGCCCGCTGGATCGAAACCGAGCTGTCCCAGTTCTTTCCCGTGTTCACCGTGGCCCC
GTCCACCATCTGCATGGACCTGGCGGCAGCCTTCATCGTGGGGGCGGTGGCCGGCATCTTCCCCACCTGGCGCGGGGTGA
CCATCCGTATCGCCGAGGGTCTCAGGAGAGTCGGATAG

Upstream 100 bases:

>100_bases
GACCATCATCATGGTTACCCACGATCCCCGGGCTGCAGAGCAGGCCCACCGGCTCCTCCACCTGGAGAAGGGTGAACTGA
CCGACGGGGCCGGCTAGCCG

Downstream 100 bases:

>100_bases
TGGGAATCCCTTACTCTTACAGCCTGCGCAATCTCTGGACCCGGCGCCTCACTACCGTGCTGACGGCATCGGGCATGGCG
CTGGTGGTCTTCGTGTTCGC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MFIIKLLIRNAFRHKLRTGLTIVGVAIAIVAFGLLRTLVDLWYAGVEASSASRLITRNSISLVFPLPISYKDRIRQVPGV
RDVSWGNWFGGIYKEEKNFFPSFAVEPRSFLAMYPEYRVDPVELKSFLLDRKGAMVGAKTAERFGWKVGDQVMLRGTIFP
GQWEFVIRGIYHGAAKSTDETQFFFHWDYLNEVMRRTVPRRADQAGYYIIELKKPDQAAEVSLAVDATFRNSLAETLTET
ERAFQMSFVSMTEAIVIAIQIVSYVVIVIIMVVAANTMAMTARERIPEYATLKTLGFGGLHIAGVIFGESLVIAMAGGVT
GVILTFPAARWIETELSQFFPVFTVAPSTICMDLAAAFIVGAVAGIFPTWRGVTIRIAEGLRRVG

Sequences:

>Translated_385_residues
MFIIKLLIRNAFRHKLRTGLTIVGVAIAIVAFGLLRTLVDLWYAGVEASSASRLITRNSISLVFPLPISYKDRIRQVPGV
RDVSWGNWFGGIYKEEKNFFPSFAVEPRSFLAMYPEYRVDPVELKSFLLDRKGAMVGAKTAERFGWKVGDQVMLRGTIFP
GQWEFVIRGIYHGAAKSTDETQFFFHWDYLNEVMRRTVPRRADQAGYYIIELKKPDQAAEVSLAVDATFRNSLAETLTET
ERAFQMSFVSMTEAIVIAIQIVSYVVIVIIMVVAANTMAMTARERIPEYATLKTLGFGGLHIAGVIFGESLVIAMAGGVT
GVILTFPAARWIETELSQFFPVFTVAPSTICMDLAAAFIVGAVAGIFPTWRGVTIRIAEGLRRVG
>Mature_385_residues
MFIIKLLIRNAFRHKLRTGLTIVGVAIAIVAFGLLRTLVDLWYAGVEASSASRLITRNSISLVFPLPISYKDRIRQVPGV
RDVSWGNWFGGIYKEEKNFFPSFAVEPRSFLAMYPEYRVDPVELKSFLLDRKGAMVGAKTAERFGWKVGDQVMLRGTIFP
GQWEFVIRGIYHGAAKSTDETQFFFHWDYLNEVMRRTVPRRADQAGYYIIELKKPDQAAEVSLAVDATFRNSLAETLTET
ERAFQMSFVSMTEAIVIAIQIVSYVVIVIIMVVAANTMAMTARERIPEYATLKTLGFGGLHIAGVIFGESLVIAMAGGVT
GVILTFPAARWIETELSQFFPVFTVAPSTICMDLAAAFIVGAVAGIFPTWRGVTIRIAEGLRRVG

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 42877; Mature: 42877

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIIKLLIRNAFRHKLRTGLTIVGVAIAIVAFGLLRTLVDLWYAGVEASSASRLITRNSI
CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECCE
SLVFPLPISYKDRIRQVPGVRDVSWGNWFGGIYKEEKNFFPSFAVEPRSFLAMYPEYRVD
EEEEECCCCHHHHHHHCCCCCCCCCCCHHCCCEEHHHCCCCCCCCCHHHHHHCCCCCCCC
PVELKSFLLDRKGAMVGAKTAERFGWKVGDQVMLRGTIFPGQWEFVIRGIYHGAAKSTDE
HHHHHHHHHHCCCCEECCHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCC
TQFFFHWDYLNEVMRRTVPRRADQAGYYIIELKKPDQAAEVSLAVDATFRNSLAETLTET
CEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHH
ERAFQMSFVSMTEAIVIAIQIVSYVVIVIIMVVAANTMAMTARERIPEYATLKTLGFGGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCH
HIAGVIFGESLVIAMAGGVTGVILTFPAARWIETELSQFFPVFTVAPSTICMDLAAAFIV
HHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH
GAVAGIFPTWRGVTIRIAEGLRRVG
HHHHHHCCCCCCEEEEHHHHHHHCC
>Mature Secondary Structure
MFIIKLLIRNAFRHKLRTGLTIVGVAIAIVAFGLLRTLVDLWYAGVEASSASRLITRNSI
CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECCE
SLVFPLPISYKDRIRQVPGVRDVSWGNWFGGIYKEEKNFFPSFAVEPRSFLAMYPEYRVD
EEEEECCCCHHHHHHHCCCCCCCCCCCHHCCCEEHHHCCCCCCCCCHHHHHHCCCCCCCC
PVELKSFLLDRKGAMVGAKTAERFGWKVGDQVMLRGTIFPGQWEFVIRGIYHGAAKSTDE
HHHHHHHHHHCCCCEECCHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCC
TQFFFHWDYLNEVMRRTVPRRADQAGYYIIELKKPDQAAEVSLAVDATFRNSLAETLTET
CEEEEEHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHH
ERAFQMSFVSMTEAIVIAIQIVSYVVIVIIMVVAANTMAMTARERIPEYATLKTLGFGGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCH
HIAGVIFGESLVIAMAGGVTGVILTFPAARWIETELSQFFPVFTVAPSTICMDLAAAFIV
HHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHH
GAVAGIFPTWRGVTIRIAEGLRRVG
HHHHHHCCCCCCEEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]