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The map label for this gene is bphB [H]

Identifier: 39996145

GI number: 39996145

Start: 1129626

End: 1131929

Strand: Reverse

Name: bphB [H]

Synonym: GSU1043

Alternate gene names: 39996145

Gene position: 1131929-1129626 (Counterclockwise)

Preceding gene: 39996151

Following gene: 39996142

Centisome position: 29.68

GC content: 60.46

Gene sequence:

>2304_bases
ATGATCGAGAACAGGAACTCGTCTGAAACCGTACCGCTCCTCGTCATAGGAACCGGAATCATCGTCGCGCTCTACCTGAC
GAGCTTTTACAGCTTCGTGCTGTTCCACGTCCTAGTTGAATTCTTCTCCGTGGTCGTGTCGGGCGCGATCTTCGTCATCG
CCTGGAACTCGCGCCGCTTTGCCGCCAACGGGTACCTGCTGGTCATCGGCATCGCCCACCTCTGCGTCGGCAGCATCGAC
CTGCTGCACACCATCGCCTACAAGGGCATGGGGCTCTTCCCCGGCTTCGACGCCAACCTCCCCACCCAACTCTGGATAGC
CGGGCGCTACCTGCAGAGCGCCTCGTTCCTCCTGGCACCTTTCTTCATCGGCCGCCGGCTCCTGTCGCGCACCCTGCTGA
CTGCATACCTGGCCGTCACCTCGCTGCTGCTCGCCGCCATCTTTGTCTGGCAGATCTTTCCCGTCTGCTTCGTGGAGGGA
GTGGGGCTTACCCCCTTCAAAAGGGTCAGCGAATACATCATCTCCGCAACATTCGTGGCGGCCCTGGTCCTGTTGCGAGT
CAAGCGCAGGGCGTTCGACCGCCGGGTCGCCAATTATCTGTCGGGAGCCATTGCTCTCATGGTGGGCGCCGAACTGGCCT
TCACCTTCTACATCGACGTCTACGGCCTGAGCAATCTGGTCGGCCACCTGTTCAAGGCGGCGGCCGTGCTGCTCATCTAC
CGGGGGCTGGTCGAGACGGCCCTGACCCGCCCCTACGATATCCTGTTCCGGGAACTGACGGAACGGGAAGAGGCCGTGCG
GGAGTCCCACCAGCGCATCTCCACCATCCTCGAAAGCATTACCGATGCGTTCTTTTCACTGGATCACTCATGGCGCTTCA
CCTACCTGAACGGGGAGGCGGAGCGATTGCTCGGGCGCACCCGAGACGACCTGCTGGGAAAGAGTATCTGGGAGGAATTC
GCCGCCGCCGTGGGCACAAGGTTTGACGTCGAGTACCGTCGCGCCGTGGCAAGCGGAACGACTGCCACGTTCGAGGAGTA
CTACCCTCCCCTCGCCTGCTGGTTCGAAGTCCACGCCTACCCCTCGCGGGATGGGCTCTCGGTCTTTTTCCAGGACATTA
CCACCCGTAAGCGGGCCGAAGCCGAGCTCCGCGCTTCGGAAGAGCGCTTTGCAAAGGCATTCAACACCGCGCCCACCATC
ATGATCATCGCATCCCTTGTCGACGGACGGTACCTGGAGGTAAACGGAGCGTTCGAAAAAACCCTTGGCTGGCGGAAGGA
AGAGGTGCTCGGCCGCACATCGTACGACCTCGGCATCTGGATTGACACCGCCGAACGCGAAAACATCCTGCGCGAGGTTG
CCGAACAGGGATCGGTCCATGACCGGGAAATCCAGTTCCGCAGCAGGAACGGTGAAACGATCATCGGCCTTTACTCGGGC
GTCATCATTGAACTGAACGGCAAGCAGTGCCTGTTAAGCATTGTACGGAACATTACTGCCCGCAAGCGGGCCGAGCAGCA
GATCGTCATCCTCAACAAGGAATTGGAGGACCGGGCGGAGGTGCTGGAGGAAACCAACTGCGAACTGGAGACGAGTGTCG
AGCAACTGGAAGCGGTAAACCGCGAACTTGAGGACGCCAACGAAGAGCTGGAGGCGTTCAACTATTCAGTCTCTCATGAC
CTGCGCCGTCCCCTCACCAACATCAACGGGTTCTCCCAGCTCATCCTGGAGTTGTACGGCCGTCAACTGGAGGCACAGTG
CCGCGATTTCGTCCGCTGCATTTACGACGAAACGCGCAACATGGATCGCCTTATCGGGACACTGCTCAACTTTTCCCGGA
TCTCGCGCTGTGCGATGAAGCCCGAAACGGTCGACCTGAGCACCATGGCCCGGCAGATAACCGAAACCCTGAAAATAGGC
GAGCCGGAGCGCAAGGTCAGCTTCCACCTGACCGAGGGAATAACGGCCCGGGGAGACGCGGGGCTGCTCCATATCGTACT
CGACAACCTGGTGGGAAATGCGTGGAAATACAGCAGCAAGCAGGAAGACGCCCGCATCGAGTTCGGCGTGACCGACAGGA
GCGGCACCGTCGCCTACTTCGTGCGCGACAACGGAGCCGGCTTTGACATGGAGTTCGCGCAACAGCTGTTCACGCCGTTC
CAGAGGCTCCATCACAGCGAGGATTTCGAAGGGCACGGCATCGGCCTTGCCACGGTGGCGCGGATCATCCAGCGCCACGG
CGGAAAGGTCTGGGCGGAAGGAGAGGTAGGACAGGGAGCTACCTTTTACTTCACCCTCTGCTGA

Upstream 100 bases:

>100_bases
TTCCTGGCTTGCGCAGCACGGCATTGAGCCGGTATACTCACCGCCGCATCGTCCCGCGAACGTTTTGGTTACAAGACATC
AAACAGGTGCAGGGATATCC

Downstream 100 bases:

>100_bases
AGATAAGACGCGAACTCCCTGTCCATGCCGCAGACATGGTCCACGAGCCACTGGAACAGGGTCCGCCCGGTTTCGATCAC
CAGCAGGTTGGTTACCCCCT

Product: sensory box histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 767; Mature: 767

Protein sequence:

>767_residues
MIENRNSSETVPLLVIGTGIIVALYLTSFYSFVLFHVLVEFFSVVVSGAIFVIAWNSRRFAANGYLLVIGIAHLCVGSID
LLHTIAYKGMGLFPGFDANLPTQLWIAGRYLQSASFLLAPFFIGRRLLSRTLLTAYLAVTSLLLAAIFVWQIFPVCFVEG
VGLTPFKRVSEYIISATFVAALVLLRVKRRAFDRRVANYLSGAIALMVGAELAFTFYIDVYGLSNLVGHLFKAAAVLLIY
RGLVETALTRPYDILFRELTEREEAVRESHQRISTILESITDAFFSLDHSWRFTYLNGEAERLLGRTRDDLLGKSIWEEF
AAAVGTRFDVEYRRAVASGTTATFEEYYPPLACWFEVHAYPSRDGLSVFFQDITTRKRAEAELRASEERFAKAFNTAPTI
MIIASLVDGRYLEVNGAFEKTLGWRKEEVLGRTSYDLGIWIDTAERENILREVAEQGSVHDREIQFRSRNGETIIGLYSG
VIIELNGKQCLLSIVRNITARKRAEQQIVILNKELEDRAEVLEETNCELETSVEQLEAVNRELEDANEELEAFNYSVSHD
LRRPLTNINGFSQLILELYGRQLEAQCRDFVRCIYDETRNMDRLIGTLLNFSRISRCAMKPETVDLSTMARQITETLKIG
EPERKVSFHLTEGITARGDAGLLHIVLDNLVGNAWKYSSKQEDARIEFGVTDRSGTVAYFVRDNGAGFDMEFAQQLFTPF
QRLHHSEDFEGHGIGLATVARIIQRHGGKVWAEGEVGQGATFYFTLC

Sequences:

>Translated_767_residues
MIENRNSSETVPLLVIGTGIIVALYLTSFYSFVLFHVLVEFFSVVVSGAIFVIAWNSRRFAANGYLLVIGIAHLCVGSID
LLHTIAYKGMGLFPGFDANLPTQLWIAGRYLQSASFLLAPFFIGRRLLSRTLLTAYLAVTSLLLAAIFVWQIFPVCFVEG
VGLTPFKRVSEYIISATFVAALVLLRVKRRAFDRRVANYLSGAIALMVGAELAFTFYIDVYGLSNLVGHLFKAAAVLLIY
RGLVETALTRPYDILFRELTEREEAVRESHQRISTILESITDAFFSLDHSWRFTYLNGEAERLLGRTRDDLLGKSIWEEF
AAAVGTRFDVEYRRAVASGTTATFEEYYPPLACWFEVHAYPSRDGLSVFFQDITTRKRAEAELRASEERFAKAFNTAPTI
MIIASLVDGRYLEVNGAFEKTLGWRKEEVLGRTSYDLGIWIDTAERENILREVAEQGSVHDREIQFRSRNGETIIGLYSG
VIIELNGKQCLLSIVRNITARKRAEQQIVILNKELEDRAEVLEETNCELETSVEQLEAVNRELEDANEELEAFNYSVSHD
LRRPLTNINGFSQLILELYGRQLEAQCRDFVRCIYDETRNMDRLIGTLLNFSRISRCAMKPETVDLSTMARQITETLKIG
EPERKVSFHLTEGITARGDAGLLHIVLDNLVGNAWKYSSKQEDARIEFGVTDRSGTVAYFVRDNGAGFDMEFAQQLFTPF
QRLHHSEDFEGHGIGLATVARIIQRHGGKVWAEGEVGQGATFYFTLC
>Mature_767_residues
MIENRNSSETVPLLVIGTGIIVALYLTSFYSFVLFHVLVEFFSVVVSGAIFVIAWNSRRFAANGYLLVIGIAHLCVGSID
LLHTIAYKGMGLFPGFDANLPTQLWIAGRYLQSASFLLAPFFIGRRLLSRTLLTAYLAVTSLLLAAIFVWQIFPVCFVEG
VGLTPFKRVSEYIISATFVAALVLLRVKRRAFDRRVANYLSGAIALMVGAELAFTFYIDVYGLSNLVGHLFKAAAVLLIY
RGLVETALTRPYDILFRELTEREEAVRESHQRISTILESITDAFFSLDHSWRFTYLNGEAERLLGRTRDDLLGKSIWEEF
AAAVGTRFDVEYRRAVASGTTATFEEYYPPLACWFEVHAYPSRDGLSVFFQDITTRKRAEAELRASEERFAKAFNTAPTI
MIIASLVDGRYLEVNGAFEKTLGWRKEEVLGRTSYDLGIWIDTAERENILREVAEQGSVHDREIQFRSRNGETIIGLYSG
VIIELNGKQCLLSIVRNITARKRAEQQIVILNKELEDRAEVLEETNCELETSVEQLEAVNRELEDANEELEAFNYSVSHD
LRRPLTNINGFSQLILELYGRQLEAQCRDFVRCIYDETRNMDRLIGTLLNFSRISRCAMKPETVDLSTMARQITETLKIG
EPERKVSFHLTEGITARGDAGLLHIVLDNLVGNAWKYSSKQEDARIEFGVTDRSGTVAYFVRDNGAGFDMEFAQQLFTPF
QRLHHSEDFEGHGIGLATVARIIQRHGGKVWAEGEVGQGATFYFTLC

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=423, Percent_Identity=23.6406619385343, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1786600, Length=242, Percent_Identity=26.8595041322314, Blast_Score=76, Evalue=9e-15,
Organism=Escherichia coli, GI1789149, Length=272, Percent_Identity=25, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1790346, Length=213, Percent_Identity=30.0469483568075, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI48994928, Length=234, Percent_Identity=23.0769230769231, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1790861, Length=227, Percent_Identity=26.431718061674, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1790436, Length=226, Percent_Identity=25.6637168141593, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786912, Length=220, Percent_Identity=29.5454545454545, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1790551, Length=340, Percent_Identity=27.6470588235294, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788713, Length=220, Percent_Identity=24.0909090909091, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI145693157, Length=245, Percent_Identity=26.1224489795918, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1786783, Length=283, Percent_Identity=23.6749116607774, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 86626; Mature: 86626

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIENRNSSETVPLLVIGTGIIVALYLTSFYSFVLFHVLVEFFSVVVSGAIFVIAWNSRRF
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEE
AANGYLLVIGIAHLCVGSIDLLHTIAYKGMGLFPGFDANLPTQLWIAGRYLQSASFLLAP
ECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
FFIGRRLLSRTLLTAYLAVTSLLLAAIFVWQIFPVCFVEGVGLTPFKRVSEYIISATFVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ALVLLRVKRRAFDRRVANYLSGAIALMVGAELAFTFYIDVYGLSNLVGHLFKAAAVLLIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHH
RGLVETALTRPYDILFRELTEREEAVRESHQRISTILESITDAFFSLDHSWRFTYLNGEA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
ERLLGRTRDDLLGKSIWEEFAAAVGTRFDVEYRRAVASGTTATFEEYYPPLACWFEVHAY
HHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHCCCCEEEEEEECC
PSRDGLSVFFQDITTRKRAEAELRASEERFAKAFNTAPTIMIIASLVDGRYLEVNGAFEK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCCHHH
TLGWRKEEVLGRTSYDLGIWIDTAERENILREVAEQGSVHDREIQFRSRNGETIIGLYSG
HHCCCHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCHHEEEECCCCCEEEEEECC
VIIELNGKQCLLSIVRNITARKRAEQQIVILNKELEDRAEVLEETNCELETSVEQLEAVN
EEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHH
RELEDANEELEAFNYSVSHDLRRPLTNINGFSQLILELYGRQLEAQCRDFVRCIYDETRN
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MDRLIGTLLNFSRISRCAMKPETVDLSTMARQITETLKIGEPERKVSFHLTEGITARGDA
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCCC
GLLHIVLDNLVGNAWKYSSKQEDARIEFGVTDRSGTVAYFVRDNGAGFDMEFAQQLFTPF
CHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHH
QRLHHSEDFEGHGIGLATVARIIQRHGGKVWAEGEVGQGATFYFTLC
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEC
>Mature Secondary Structure
MIENRNSSETVPLLVIGTGIIVALYLTSFYSFVLFHVLVEFFSVVVSGAIFVIAWNSRRF
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCEE
AANGYLLVIGIAHLCVGSIDLLHTIAYKGMGLFPGFDANLPTQLWIAGRYLQSASFLLAP
ECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
FFIGRRLLSRTLLTAYLAVTSLLLAAIFVWQIFPVCFVEGVGLTPFKRVSEYIISATFVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
ALVLLRVKRRAFDRRVANYLSGAIALMVGAELAFTFYIDVYGLSNLVGHLFKAAAVLLIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHH
RGLVETALTRPYDILFRELTEREEAVRESHQRISTILESITDAFFSLDHSWRFTYLNGEA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
ERLLGRTRDDLLGKSIWEEFAAAVGTRFDVEYRRAVASGTTATFEEYYPPLACWFEVHAY
HHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHCCCCEEEEEEECC
PSRDGLSVFFQDITTRKRAEAELRASEERFAKAFNTAPTIMIIASLVDGRYLEVNGAFEK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCCHHH
TLGWRKEEVLGRTSYDLGIWIDTAERENILREVAEQGSVHDREIQFRSRNGETIIGLYSG
HHCCCHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCCCCHHEEEECCCCCEEEEEECC
VIIELNGKQCLLSIVRNITARKRAEQQIVILNKELEDRAEVLEETNCELETSVEQLEAVN
EEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHH
RELEDANEELEAFNYSVSHDLRRPLTNINGFSQLILELYGRQLEAQCRDFVRCIYDETRN
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MDRLIGTLLNFSRISRCAMKPETVDLSTMARQITETLKIGEPERKVSFHLTEGITARGDA
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCCC
GLLHIVLDNLVGNAWKYSSKQEDARIEFGVTDRSGTVAYFVRDNGAGFDMEFAQQLFTPF
CHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHH
QRLHHSEDFEGHGIGLATVARIIQRHGGKVWAEGEVGQGATFYFTLC
HHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]