| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is dnaB [H]
Identifier: 39996101
GI number: 39996101
Start: 1077822
End: 1079192
Strand: Direct
Name: dnaB [H]
Synonym: GSU0998
Alternate gene names: 39996101
Gene position: 1077822-1079192 (Clockwise)
Preceding gene: 39996099
Following gene: 39996102
Centisome position: 28.26
GC content: 61.42
Gene sequence:
>1371_bases ATGTCCGCGGTCGATCTGAGAAAAGTTCCTCCCCAGAGCATTGAAGCCGAGATGTCGATTCTCGGCGGCGTGCTCCTCGA TAACGAGGCGATCAACCGCTGTCTGGAGTTGATCGAGGCCGACGATTTCTATCGCGAGTCCCACCGCAAGATATTCCGGG CCATGATCGACCTATCCAACCGGAGCGAGCCCTGCGACCTGATCACCCTCACGGACATGCTCAAGCGCAAGGGAGAGCTG GAGGAGGTGGGGGGCGGCGCCTATCTTGCCACCCTGGTGGACTATGTCCCCACTGCCGCCAACATCGCCTACTACTGCCG GATCGTGAAGGAGAAGTCGGTAACCCGGCGCCTCATCACCGCCGCCACCGACATCGTCACCCGCGGCTATGACGAGGAGA CCACGGTGGACGAGCTTCTGGACGGCGCCCAGAAGACCATCTTCGAGATTTCCGAGAACAAGCTCCGCCCTGCTTTCACC CCGGTGGGCACCATCCTCAAGGATACCTTCAAGAGAATCGAGACCCTCTACGAAAAGAAAGAGCACGTAACCGGCGTCCC CACCGGGTTCTACGACCTGGACAAGATGACCGCCGGTTTCCAGCCGGGCGATCTCATCATCATTGCCGGCCGCCCCTCCA TGGGCAAGACGGCCTTTTCCCTCAATATCGCCCAGTATGCCGCGGCCCATGCCGATCCGCCCCTGCCCGTGGCCGTGTTC TCCCTGGAGATGAGCAAGGAATCCCTGGTTATGCGTCTGCTCTGCTCCGAGTCGCGGGTTGATGCCAGCCGCCTGCGGAC CGGTCACCTGGTGGACACCGACTGGCACAAGCTGACCCACGGGGCCGACAAGCTTTCCAAGGCCCGGCTCTACATCGACG ATACCCCGGCCATTCCGGTGCTGGAGATGCGGGCCAAGGCCCGGCGCCTCAAGGCGGAGAACGGCCTCGGCATGATCGTG GTGGACTATCTCCAGCTCATGCGCGGCTCCAGTCAGGAGTCACGCCAGCAGGAGATCTCGGAAATCTCCCGCTCCCTCAA GGCCCTGGCCAAGGAGCTGGACGTGCCGGTGGTGGCGCTCTCCCAGCTCAACCGGAGCCTGGAAAGCCGCACCGACAAGC GCCCCATGATGAGCGACCTGCGGGAATCGGGGGCCATAGAGCAGGACGCCGACGTGATCATGTTCGTGTATCGCGACGCT GTCTACTGCGATGACTGCAAGAAGCGCGACGGTTCCTGCACCAAGGGGCACGAGAAGGACGCCGAGATCATTATCGGCAA GCAGCGTAACGGCCCCATCGGCTCCGTCAACCTGCTGTTCAACGGCGAATTCACCAAGTTCGAAAATATGGAGAAGCATC ATGATTACTAA
Upstream 100 bases:
>100_bases GCGCCGCCGGCCCGGTCAAAACGGTTGACCCGGACCGGCGGCGCAGGGTATAGTACCCCTTCCTCCGACTCACATCCAGC GTTTCTTCCCAAGGCAGGTC
Downstream 100 bases:
>100_bases CATTCATCCGACTGCCCACATAAGCCCCTCCGCCACCATTGCCGACGGCGCGGAAATCGGCCCCAACGTCATCGTGGGAG ATCACTCCTCCATCGGCGCC
Product: replicative DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MSAVDLRKVPPQSIEAEMSILGGVLLDNEAINRCLELIEADDFYRESHRKIFRAMIDLSNRSEPCDLITLTDMLKRKGEL EEVGGGAYLATLVDYVPTAANIAYYCRIVKEKSVTRRLITAATDIVTRGYDEETTVDELLDGAQKTIFEISENKLRPAFT PVGTILKDTFKRIETLYEKKEHVTGVPTGFYDLDKMTAGFQPGDLIIIAGRPSMGKTAFSLNIAQYAAAHADPPLPVAVF SLEMSKESLVMRLLCSESRVDASRLRTGHLVDTDWHKLTHGADKLSKARLYIDDTPAIPVLEMRAKARRLKAENGLGMIV VDYLQLMRGSSQESRQQEISEISRSLKALAKELDVPVVALSQLNRSLESRTDKRPMMSDLRESGAIEQDADVIMFVYRDA VYCDDCKKRDGSCTKGHEKDAEIIIGKQRNGPIGSVNLLFNGEFTKFENMEKHHDY
Sequences:
>Translated_456_residues MSAVDLRKVPPQSIEAEMSILGGVLLDNEAINRCLELIEADDFYRESHRKIFRAMIDLSNRSEPCDLITLTDMLKRKGEL EEVGGGAYLATLVDYVPTAANIAYYCRIVKEKSVTRRLITAATDIVTRGYDEETTVDELLDGAQKTIFEISENKLRPAFT PVGTILKDTFKRIETLYEKKEHVTGVPTGFYDLDKMTAGFQPGDLIIIAGRPSMGKTAFSLNIAQYAAAHADPPLPVAVF SLEMSKESLVMRLLCSESRVDASRLRTGHLVDTDWHKLTHGADKLSKARLYIDDTPAIPVLEMRAKARRLKAENGLGMIV VDYLQLMRGSSQESRQQEISEISRSLKALAKELDVPVVALSQLNRSLESRTDKRPMMSDLRESGAIEQDADVIMFVYRDA VYCDDCKKRDGSCTKGHEKDAEIIIGKQRNGPIGSVNLLFNGEFTKFENMEKHHDY >Mature_455_residues SAVDLRKVPPQSIEAEMSILGGVLLDNEAINRCLELIEADDFYRESHRKIFRAMIDLSNRSEPCDLITLTDMLKRKGELE EVGGGAYLATLVDYVPTAANIAYYCRIVKEKSVTRRLITAATDIVTRGYDEETTVDELLDGAQKTIFEISENKLRPAFTP VGTILKDTFKRIETLYEKKEHVTGVPTGFYDLDKMTAGFQPGDLIIIAGRPSMGKTAFSLNIAQYAAAHADPPLPVAVFS LEMSKESLVMRLLCSESRVDASRLRTGHLVDTDWHKLTHGADKLSKARLYIDDTPAIPVLEMRAKARRLKAENGLGMIVV DYLQLMRGSSQESRQQEISEISRSLKALAKELDVPVVALSQLNRSLESRTDKRPMMSDLRESGAIEQDADVIMFVYRDAV YCDDCKKRDGSCTKGHEKDAEIIIGKQRNGPIGSVNLLFNGEFTKFENMEKHHDY
Specific function: Participates In Initiation And Elongation During Chromosome Replication; It Exhibits DNA-Dependent ATPase Activity And Contains Distinct Active Sites For ATP Binding, DNA Binding, And Interaction With DNAc Protein, Primase, And Other Prepriming Proteins.
COG id: COG0305
COG function: function code L; Replicative DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SF4 helicase domain [H]
Homologues:
Organism=Escherichia coli, GI1790486, Length=450, Percent_Identity=52.4444444444444, Blast_Score=434, Evalue=1e-123,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007692 - InterPro: IPR007694 - InterPro: IPR007693 - InterPro: IPR016136 [H]
Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 51063; Mature: 50932
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVDLRKVPPQSIEAEMSILGGVLLDNEAINRCLELIEADDFYRESHRKIFRAMIDLSN CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RSEPCDLITLTDMLKRKGELEEVGGGAYLATLVDYVPTAANIAYYCRIVKEKSVTRRLIT CCCCCCEEHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH AATDIVTRGYDEETTVDELLDGAQKTIFEISENKLRPAFTPVGTILKDTFKRIETLYEKK HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH EHVTGVPTGFYDLDKMTAGFQPGDLIIIAGRPSMGKTAFSLNIAQYAAAHADPPLPVAVF HHCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHCCCCCCCEEEE SLEMSKESLVMRLLCSESRVDASRLRTGHLVDTDWHKLTHGADKLSKARLYIDDTPAIPV EECCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHCCHHHHHHCEEEECCCCCCCH LEMRAKARRLKAENGLGMIVVDYLQLMRGSSQESRQQEISEISRSLKALAKELDVPVVAL HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH SQLNRSLESRTDKRPMMSDLRESGAIEQDADVIMFVYRDAVYCDDCKKRDGSCTKGHEKD HHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHCHHHCCCCCCCCCCCCC AEIIIGKQRNGPIGSVNLLFNGEFTKFENMEKHHDY CEEEEECCCCCCCCEEEEEECCCCHHHHCCHHHCCC >Mature Secondary Structure SAVDLRKVPPQSIEAEMSILGGVLLDNEAINRCLELIEADDFYRESHRKIFRAMIDLSN CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RSEPCDLITLTDMLKRKGELEEVGGGAYLATLVDYVPTAANIAYYCRIVKEKSVTRRLIT CCCCCCEEHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH AATDIVTRGYDEETTVDELLDGAQKTIFEISENKLRPAFTPVGTILKDTFKRIETLYEKK HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH EHVTGVPTGFYDLDKMTAGFQPGDLIIIAGRPSMGKTAFSLNIAQYAAAHADPPLPVAVF HHCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHCCCCCCCEEEE SLEMSKESLVMRLLCSESRVDASRLRTGHLVDTDWHKLTHGADKLSKARLYIDDTPAIPV EECCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHCCHHHHHHCEEEECCCCCCCH LEMRAKARRLKAENGLGMIVVDYLQLMRGSSQESRQQEISEISRSLKALAKELDVPVVAL HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH SQLNRSLESRTDKRPMMSDLRESGAIEQDADVIMFVYRDAVYCDDCKKRDGSCTKGHEKD HHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHCHHHCCCCCCCCCCCCC AEIIIGKQRNGPIGSVNLLFNGEFTKFENMEKHHDY CEEEEECCCCCCCCEEEEEECCCCHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377; 1312531 [H]