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The map label for this gene is slmA [H]

Identifier: 39996054

GI number: 39996054

Start: 1023807

End: 1024397

Strand: Reverse

Name: slmA [H]

Synonym: GSU0951

Alternate gene names: 39996054

Gene position: 1024397-1023807 (Counterclockwise)

Preceding gene: 39996056

Following gene: 39996053

Centisome position: 26.86

GC content: 63.62

Gene sequence:

>591_bases
ATGATTCCCAAGAAAAGCACCCGCATCCGCAAGGAAGAGATCGTCCAGGCCTCGCTCCGGGTCATCGGCGAGCGCGGCGC
CAATGCCATGACCACCGCGGCCATCGCGGAGGCGGCGGGCATGAGCGAGTCGAACATCTATCGTCACTTCGGCGGCAAGC
TGGAAATCAACCTGGCCCTGACCGATTTCATCGGCGCAGCACTGGCCGGACGGGCGGCGACGATCGCAGCGGGAAGCCAG
CGGCCCGTGGAAAAACTGCACCAGATCTTCACCGGCCATCTCGCCCTCATTGCCGAGAATCCGGGCATCCCCCGCTTCAT
TTTCTCCGAGGAGGTTCACCTGGGAGACCGGCGACTGGCGGAGAAAATGGCCATCTGGATCGGGAGCTACCTGGAAACCC
TGGCGGGGGTGGTGGCCGCGGGCATTGCCGAAGGGGAATTCCGTCAGGGGATTGCCCCCCGGGAGACCGCCATGACGTTC
CTGGGGATGATCTCCTTCACCGCAATCCGCTGGTCGATGAGCGGCTTCGCCTTTGATATCCGGGACGAGTCCGCGCGGCT
CTGGGACAATTTCGCGGAACTGCTCCGCTAA

Upstream 100 bases:

>100_bases
TTGCACCAGCATGAAGACCTCTGCGTTCAACCCATTTTCTCCATTGACACGCCCCCCCCACATCCGCTAACGTGAGCACA
TACTCGCATAAGGCGGTTCC

Downstream 100 bases:

>100_bases
TTTTTTTACCCCAAAAGTGAGCAAATGCTCACTTAATATTCATTTTACTGAATAAGGAACCATGCCATGCGAGTGATGAT
CGTGACTGCGGCGCTTCTCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MIPKKSTRIRKEEIVQASLRVIGERGANAMTTAAIAEAAGMSESNIYRHFGGKLEINLALTDFIGAALAGRAATIAAGSQ
RPVEKLHQIFTGHLALIAENPGIPRFIFSEEVHLGDRRLAEKMAIWIGSYLETLAGVVAAGIAEGEFRQGIAPRETAMTF
LGMISFTAIRWSMSGFAFDIRDESARLWDNFAELLR

Sequences:

>Translated_196_residues
MIPKKSTRIRKEEIVQASLRVIGERGANAMTTAAIAEAAGMSESNIYRHFGGKLEINLALTDFIGAALAGRAATIAAGSQ
RPVEKLHQIFTGHLALIAENPGIPRFIFSEEVHLGDRRLAEKMAIWIGSYLETLAGVVAAGIAEGEFRQGIAPRETAMTF
LGMISFTAIRWSMSGFAFDIRDESARLWDNFAELLR
>Mature_196_residues
MIPKKSTRIRKEEIVQASLRVIGERGANAMTTAAIAEAAGMSESNIYRHFGGKLEINLALTDFIGAALAGRAATIAAGSQ
RPVEKLHQIFTGHLALIAENPGIPRFIFSEEVHLGDRRLAEKMAIWIGSYLETLAGVVAAGIAEGEFRQGIAPRETAMTF
LGMISFTAIRWSMSGFAFDIRDESARLWDNFAELLR

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21393; Mature: 21393

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPKKSTRIRKEEIVQASLRVIGERGANAMTTAAIAEAAGMSESNIYRHFGGKLEINLAL
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEEH
TDFIGAALAGRAATIAAGSQRPVEKLHQIFTGHLALIAENPGIPRFIFSEEVHLGDRRLA
HHHHHHHHHCCHHEECCCCCCHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCCHHHHH
EKMAIWIGSYLETLAGVVAAGIAEGEFRQGIAPRETAMTFLGMISFTAIRWSMSGFAFDI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
RDESARLWDNFAELLR
CCCHHHHHHHHHHHHC
>Mature Secondary Structure
MIPKKSTRIRKEEIVQASLRVIGERGANAMTTAAIAEAAGMSESNIYRHFGGKLEINLAL
CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEEH
TDFIGAALAGRAATIAAGSQRPVEKLHQIFTGHLALIAENPGIPRFIFSEEVHLGDRRLA
HHHHHHHHHCCHHEECCCCCCHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCCCHHHHH
EKMAIWIGSYLETLAGVVAAGIAEGEFRQGIAPRETAMTFLGMISFTAIRWSMSGFAFDI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
RDESARLWDNFAELLR
CCCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]