Click here to switch to the map view.

The map label for this gene is tsr [C]

Identifier: 39996019

GI number: 39996019

Start: 982110

End: 983294

Strand: Reverse

Name: tsr [C]

Synonym: GSU0916

Alternate gene names: 39996019

Gene position: 983294-982110 (Counterclockwise)

Preceding gene: 39996020

Following gene: 39996015

Centisome position: 25.78

GC content: 63.12

Gene sequence:

>1185_bases
ATGGTGTCACTGTGGAACTTCTATCTCAACTTTTCAGTAAAGGCCCGTCTTGCCACGCTCTGCGTCTGCTACAGCGCCTG
CATCGCCGCGACGGCACTGGCCGCCCAAGCCGATTCGGCCCTTATCAAGTACGGATCCGTGATCCTCTTTATCGTCCTGG
GGGGTATCTTCGGCTGGATCAACATCTGGTCCATCAACCGGCCGATCCAGAGGGCAATCGGTTATCTGCAAACCATGGCG
CGTGGTGACCTGAGCCAGGAAATCACGGTGTTCCGGAAGAATGAGTTCAGCAAGATGCTCCTGACCATGCGGGAGCTCCA
GGGCTCCATGCGCGACATCATCTCCGGCATCCAGACTACGGCGGCCGATCTGTCCGCCGCCTCCGACCTGCTCCGCACCA
CCTCCTCGCAGATTGCCGAAGGGACCGACCACGCCTCCCAAGAATCGGCATCCATCACCACGGCGGTGGATGAAATGGCC
TCGGTGAGCCTCGCCATCTCGCACAACTGTCAGAAGATGGCAGAGGAGGCGTCGGGCACCGGCCACGCCACCGAAAGTGG
AACGGAAACCATCTCCCGGATGACCACTATCATGGAGGCGGTCGAGCAGATGGTGTCCGGCACCATGGCGGCGGTCAACG
CGCTGGGCGCCAACTCCGAACGGATCGGCGACATCATCACCGCCATCAGGGACATTGCCGATCAGACCAACCTGCTGGCG
CTCAACGCCGCCATCGAGGCGGCCCGTGCCGGCGAGCAGGGACGCGGCTTCGCCGTGGTGGCCGACGAGGTGCGCAACCT
CGCCGAGCGGACGACCTCGTCCACCAGGGAAATCCAGTCCATCATCGGCGCTCTGCAGGGCGACGTCAAAAACGTGATGG
GCCTCATGGAGCAGAGCTCCGACAGTGTCCGCAACGGCACCCGGGACATGCATCTCTCCCGCCAGGCCATCGGGGCCATC
AAGGAGCACATTGCCCCCCTCATTGACCACGTCTCCCAAGTGGCCATCGCGGCGGAAGAGCAGTCGGCCACCACTGCCAG
CATCACGGAGAACATCCACCGCATCGCGCTGGTGATTCGCGACGCAGCCCAGGGAGCCCAGCAGACGGAAACCGCGGCGG
CCGATCTGGCGCAGTCGGCGACGGAACTCCAGCAGATGGTCAACCGCTTCAAGCTCTCGGCCTGA

Upstream 100 bases:

>100_bases
AATATCGGTCGTTTCCAGACTTTTTGGCTAAACTATCCGCCTTCCCCGCCGATACATTGTATACGGCCATGCGTTATTAT
TTAGTTACGGGGGAGCGACA

Downstream 100 bases:

>100_bases
CGAACGTCTATCCCGACCCCGGAGACACCTCCTGCACACAAAAAAGGCCGCCCCGTTCAGGGCGGCCTTTTTCATGGTAT
CAATCCCACTCCCCTTAACC

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MVSLWNFYLNFSVKARLATLCVCYSACIAATALAAQADSALIKYGSVILFIVLGGIFGWINIWSINRPIQRAIGYLQTMA
RGDLSQEITVFRKNEFSKMLLTMRELQGSMRDIISGIQTTAADLSAASDLLRTTSSQIAEGTDHASQESASITTAVDEMA
SVSLAISHNCQKMAEEASGTGHATESGTETISRMTTIMEAVEQMVSGTMAAVNALGANSERIGDIITAIRDIADQTNLLA
LNAAIEAARAGEQGRGFAVVADEVRNLAERTTSSTREIQSIIGALQGDVKNVMGLMEQSSDSVRNGTRDMHLSRQAIGAI
KEHIAPLIDHVSQVAIAAEEQSATTASITENIHRIALVIRDAAQGAQQTETAAADLAQSATELQQMVNRFKLSA

Sequences:

>Translated_394_residues
MVSLWNFYLNFSVKARLATLCVCYSACIAATALAAQADSALIKYGSVILFIVLGGIFGWINIWSINRPIQRAIGYLQTMA
RGDLSQEITVFRKNEFSKMLLTMRELQGSMRDIISGIQTTAADLSAASDLLRTTSSQIAEGTDHASQESASITTAVDEMA
SVSLAISHNCQKMAEEASGTGHATESGTETISRMTTIMEAVEQMVSGTMAAVNALGANSERIGDIITAIRDIADQTNLLA
LNAAIEAARAGEQGRGFAVVADEVRNLAERTTSSTREIQSIIGALQGDVKNVMGLMEQSSDSVRNGTRDMHLSRQAIGAI
KEHIAPLIDHVSQVAIAAEEQSATTASITENIHRIALVIRDAAQGAQQTETAAADLAQSATELQQMVNRFKLSA
>Mature_394_residues
MVSLWNFYLNFSVKARLATLCVCYSACIAATALAAQADSALIKYGSVILFIVLGGIFGWINIWSINRPIQRAIGYLQTMA
RGDLSQEITVFRKNEFSKMLLTMRELQGSMRDIISGIQTTAADLSAASDLLRTTSSQIAEGTDHASQESASITTAVDEMA
SVSLAISHNCQKMAEEASGTGHATESGTETISRMTTIMEAVEQMVSGTMAAVNALGANSERIGDIITAIRDIADQTNLLA
LNAAIEAARAGEQGRGFAVVADEVRNLAERTTSSTREIQSIIGALQGDVKNVMGLMEQSSDSVRNGTRDMHLSRQAIGAI
KEHIAPLIDHVSQVAIAAEEQSATTASITENIHRIALVIRDAAQGAQQTETAAADLAQSATELQQMVNRFKLSA

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=297, Percent_Identity=32.996632996633, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1788194, Length=356, Percent_Identity=27.5280898876405, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787690, Length=357, Percent_Identity=28.8515406162465, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1788195, Length=301, Percent_Identity=27.906976744186, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789453, Length=329, Percent_Identity=27.0516717325228, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004010
- InterPro:   IPR003122
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR022094 [H]

Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 42028; Mature: 42028

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLWNFYLNFSVKARLATLCVCYSACIAATALAAQADSALIKYGSVILFIVLGGIFGWI
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIWSINRPIQRAIGYLQTMARGDLSQEITVFRKNEFSKMLLTMRELQGSMRDIISGIQTT
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AADLSAASDLLRTTSSQIAEGTDHASQESASITTAVDEMASVSLAISHNCQKMAEEASGT
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GHATESGTETISRMTTIMEAVEQMVSGTMAAVNALGANSERIGDIITAIRDIADQTNLLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEH
LNAAIEAARAGEQGRGFAVVADEVRNLAERTTSSTREIQSIIGALQGDVKNVMGLMEQSS
HHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSVRNGTRDMHLSRQAIGAIKEHIAPLIDHVSQVAIAAEEQSATTASITENIHRIALVIR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DAAQGAQQTETAAADLAQSATELQQMVNRFKLSA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVSLWNFYLNFSVKARLATLCVCYSACIAATALAAQADSALIKYGSVILFIVLGGIFGWI
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIWSINRPIQRAIGYLQTMARGDLSQEITVFRKNEFSKMLLTMRELQGSMRDIISGIQTT
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AADLSAASDLLRTTSSQIAEGTDHASQESASITTAVDEMASVSLAISHNCQKMAEEASGT
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GHATESGTETISRMTTIMEAVEQMVSGTMAAVNALGANSERIGDIITAIRDIADQTNLLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEH
LNAAIEAARAGEQGRGFAVVADEVRNLAERTTSSTREIQSIIGALQGDVKNVMGLMEQSS
HHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSVRNGTRDMHLSRQAIGAIKEHIAPLIDHVSQVAIAAEEQSATTASITENIHRIALVIR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
DAAQGAQQTETAAADLAQSATELQQMVNRFKLSA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA