| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is yitJ [H]
Identifier: 39995966
GI number: 39995966
Start: 919385
End: 920290
Strand: Reverse
Name: yitJ [H]
Synonym: GSU0860
Alternate gene names: 39995966
Gene position: 920290-919385 (Counterclockwise)
Preceding gene: 308513290
Following gene: 39995965
Centisome position: 24.13
GC content: 66.23
Gene sequence:
>906_bases ATGACCGGTACGCCGTCATCACTCAGCGCCGCCCTCGCCGCAGGCCACTTCGTCGTCACAACGGAGATCTGCCCGCCCAA GGGGAGCAATTGTACCGAATTCCTCCGCAAGGCCCGGGCCCTGCGCCAGGCCGTCGATGCCGTGAACGTCACCGACAACC AGGGGGCCAACATGCGGATTTCCCCCCTGGCGCCGGCGGCGCTGCTGGTACGGGAAGGGATCGAGCCCATCCTTCAGCTC ACCTGTCGCGACCGCAACCGGATGGCGCTCCAGAGCGAACTGCTGGCCGCCTCTGCCCTGGGGATCACCAACGTGCTGGC GCTCACCGGCGACTTCATCACCTTCGGCGATCACCGGGAGGCCAAGCCGGTGTTCGACCTGGACTCGGTTCAGCTCCTGC GGATCATTACCGGGCTCAATGAAGGACGGGACCTCTCGAGGACGGCCCTGACCGGCGCCACTTCGTTCTTTGCCGGAGCC GCGGCGGCCCCCGAAGCGGAGCCTTTTGCACTCACCCTCTCCAAGCTGGCGAAGAAAGCTGCTGCCGGAGCCCGATTCCT CCAGACCCAGGCAGTCTTCTCGCCGGAGCGGTTCGCCCGGTTCGCCGATGCGACGCGCCCTCTAGGCATGAAAATCATCG CAGGCATCCTGTTGCTGAAGTCGCCCGGCATGGCCCGTTACGTGACCGAACGGGTGCCGGGCCTCAAGGTCCCCCCCGAA CTTGTTGCGGAGCTAGAGAGTGCCAGTGATCCGCTGGCCGCCGGCGTCGAGATAGCCCGGCGGACCGTGGCGGCGGTCAG ACCCTTCTGCGACGGAGTCCACATCATGGCCATGGGGCGGGAGGACCTGGTCCCCGCCATCGTTGCCGGTGTGGAACGGG ACAGTCAGGAACACACTACGATCTGA
Upstream 100 bases:
>100_bases CCCGCCTCCACGGTCAGGTGGAAACGGGTCCCCTGGCCGAAACCACTCCCCCTGCCGACTTCTCCACCTGCCGCCGGCCG GCGGACCTGAAACTCGACAA
Downstream 100 bases:
>100_bases AAGGAGTCGGATCATGCAGGTAAAAAAAGCGGTATTCCCGGTGGCGGGACTCGGTACCCGGTTTCTTCCGGCAACCAAAT CATCTCCCAAGGAGATGCTC
Product: methylenetetrahydrofolate reductase
Products: NA
Alternate protein names: Homocysteine S-methyltransferase; S-methylmethionine:homocysteine methyltransferase; 5,10-methylenetetrahydrofolate reductase [H]
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MTGTPSSLSAALAAGHFVVTTEICPPKGSNCTEFLRKARALRQAVDAVNVTDNQGANMRISPLAPAALLVREGIEPILQL TCRDRNRMALQSELLAASALGITNVLALTGDFITFGDHREAKPVFDLDSVQLLRIITGLNEGRDLSRTALTGATSFFAGA AAAPEAEPFALTLSKLAKKAAAGARFLQTQAVFSPERFARFADATRPLGMKIIAGILLLKSPGMARYVTERVPGLKVPPE LVAELESASDPLAAGVEIARRTVAAVRPFCDGVHIMAMGREDLVPAIVAGVERDSQEHTTI
Sequences:
>Translated_301_residues MTGTPSSLSAALAAGHFVVTTEICPPKGSNCTEFLRKARALRQAVDAVNVTDNQGANMRISPLAPAALLVREGIEPILQL TCRDRNRMALQSELLAASALGITNVLALTGDFITFGDHREAKPVFDLDSVQLLRIITGLNEGRDLSRTALTGATSFFAGA AAAPEAEPFALTLSKLAKKAAAGARFLQTQAVFSPERFARFADATRPLGMKIIAGILLLKSPGMARYVTERVPGLKVPPE LVAELESASDPLAAGVEIARRTVAAVRPFCDGVHIMAMGREDLVPAIVAGVERDSQEHTTI >Mature_300_residues TGTPSSLSAALAAGHFVVTTEICPPKGSNCTEFLRKARALRQAVDAVNVTDNQGANMRISPLAPAALLVREGIEPILQLT CRDRNRMALQSELLAASALGITNVLALTGDFITFGDHREAKPVFDLDSVQLLRIITGLNEGRDLSRTALTGATSFFAGAA AAPEAEPFALTLSKLAKKAAAGARFLQTQAVFSPERFARFADATRPLGMKIIAGILLLKSPGMARYVTERVPGLKVPPEL VAELESASDPLAAGVEIARRTVAAVRPFCDGVHIMAMGREDLVPAIVAGVERDSQEHTTI
Specific function: Unknown
COG id: COG0685
COG function: function code E; 5,10-methylenetetrahydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Hcy-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003171 - InterPro: IPR003726 [H]
Pfam domain/function: PF02219 MTHFR; PF02574 S-methyl_trans [H]
EC number: =2.1.1.10; =1.5.1.20 [H]
Molecular weight: Translated: 31865; Mature: 31734
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTPSSLSAALAAGHFVVTTEICPPKGSNCTEFLRKARALRQAVDAVNVTDNQGANMRI CCCCCHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE SPLAPAALLVREGIEPILQLTCRDRNRMALQSELLAASALGITNVLALTGDFITFGDHRE CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC AKPVFDLDSVQLLRIITGLNEGRDLSRTALTGATSFFAGAAAAPEAEPFALTLSKLAKKA CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH AAGARFLQTQAVFSPERFARFADATRPLGMKIIAGILLLKSPGMARYVTERVPGLKVPPE HHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHH LVAELESASDPLAAGVEIARRTVAAVRPFCDGVHIMAMGREDLVPAIVAGVERDSQEHTT HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCCCC I C >Mature Secondary Structure TGTPSSLSAALAAGHFVVTTEICPPKGSNCTEFLRKARALRQAVDAVNVTDNQGANMRI CCCCHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE SPLAPAALLVREGIEPILQLTCRDRNRMALQSELLAASALGITNVLALTGDFITFGDHRE CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC AKPVFDLDSVQLLRIITGLNEGRDLSRTALTGATSFFAGAAAAPEAEPFALTLSKLAKKA CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH AAGARFLQTQAVFSPERFARFADATRPLGMKIIAGILLLKSPGMARYVTERVPGLKVPPE HHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHH LVAELESASDPLAAGVEIARRTVAAVRPFCDGVHIMAMGREDLVPAIVAGVERDSQEHTT HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCCCCCC I C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9353932; 9384377 [H]