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The map label for this gene is 39995957

Identifier: 39995957

GI number: 39995957

Start: 910841

End: 911566

Strand: Direct

Name: 39995957

Synonym: GSU0851

Alternate gene names: NA

Gene position: 910841-911566 (Clockwise)

Preceding gene: 39995956

Following gene: 39995959

Centisome position: 23.88

GC content: 63.36

Gene sequence:

>726_bases
GTGATCCCGCTCAAGGACTACAACCCGACGCGACGCTTGCCGGTGGTGAGCGTCGCGCTCATCATTCTCAATTGTGCCGC
GTTCCTGTTCGACCGTTACACCGGCCACTACGAGCCGCTGATCGTTGAGACGGCCCGGGGGCTGGTCCGAACGCGGCAGT
TCGTCGGAGGACTGTCGGCGGACTACTCGCTGGTTCCCGCCGTGCTTACTTCCCATCCCCTCCTTGCCTTGCCCACCATC
ATCACCTCAATGTTCCTCCACGGCAACTGGCTCCACATCGGCTCAAACATGCTCTACCTCTGGATATTCGGCAACAATGT
GGAGGATGTGCTGGGGCGGTTCCGCTTCGTGGTGTTCTATCTGGGCTGCGGCGCCGTGGCGGCCCTGGCCCAGGTGGCAA
GCGCGCCCGGTTCCGATATCCCGATGGTGGGGGCCAGCGGCGCCGTTGCCGGCGTGATGGGGGCCTATCTGCTCCTGTTC
CCCCATGCGCGGATACTGACGCTGGTGCCGATCATCTTCTTTTTTACCTTCATCGAAGTACCGGCATTCATCATCATCGG
CTGGTGGGTGCTCATCCAGTTCCTGAACGCCAACTGGCTCGGCGGGGGGGAATTGCGTGGCGGCGTGGCCTATTTCGCAC
ACATCGGCGGGTTTGTGGCCGGGATTGTAGGTCTCTGGCTTTTCGGGGCGGCGCGCCGGGGGGGCAGGCCCTACCGGCGC
TGGTAG

Upstream 100 bases:

>100_bases
GGTGATCGGCACGTGCAAGACCGCCGAGGGCATGGCTCCCGGTGCTCCTGTCAAGTGCGAGGACGAGGGGCAGAAGAAAT
AGCGGAGGCCTCGCACTTCC

Downstream 100 bases:

>100_bases
TTTTTCACGGAGATCCGTAGAAGGTGTGGAACCGGGAGATGCCGCTCATGCGCTCTTCCGACAGGTAGTACCGGTAGAAA
AACCGTATGGTCTTGGGTTT

Product: rhomboid family protein

Products: NA

Alternate protein names: Integral Membrane Protein; Peptidase; Rhomboid-Like Protein; S54 Family Peptidase; Peptidase Protein; Rhomboid Family Transmembrane Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Transmembrane Rhomboid Family Protein; Subfamily; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MIPLKDYNPTRRLPVVSVALIILNCAAFLFDRYTGHYEPLIVETARGLVRTRQFVGGLSADYSLVPAVLTSHPLLALPTI
ITSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRFRFVVFYLGCGAVAALAQVASAPGSDIPMVGASGAVAGVMGAYLLLF
PHARILTLVPIIFFFTFIEVPAFIIIGWWVLIQFLNANWLGGGELRGGVAYFAHIGGFVAGIVGLWLFGAARRGGRPYRR
W

Sequences:

>Translated_241_residues
MIPLKDYNPTRRLPVVSVALIILNCAAFLFDRYTGHYEPLIVETARGLVRTRQFVGGLSADYSLVPAVLTSHPLLALPTI
ITSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRFRFVVFYLGCGAVAALAQVASAPGSDIPMVGASGAVAGVMGAYLLLF
PHARILTLVPIIFFFTFIEVPAFIIIGWWVLIQFLNANWLGGGELRGGVAYFAHIGGFVAGIVGLWLFGAARRGGRPYRR
W
>Mature_241_residues
MIPLKDYNPTRRLPVVSVALIILNCAAFLFDRYTGHYEPLIVETARGLVRTRQFVGGLSADYSLVPAVLTSHPLLALPTI
ITSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRFRFVVFYLGCGAVAALAQVASAPGSDIPMVGASGAVAGVMGAYLLLF
PHARILTLVPIIFFFTFIEVPAFIIIGWWVLIQFLNANWLGGGELRGGVAYFAHIGGFVAGIVGLWLFGAARRGGRPYRR
W

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6321538, Length=166, Percent_Identity=33.7349397590361, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26383; Mature: 26383

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPLKDYNPTRRLPVVSVALIILNCAAFLFDRYTGHYEPLIVETARGLVRTRQFVGGLSA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
DYSLVPAVLTSHPLLALPTIITSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRFRFVVFY
CHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHH
LGCGAVAALAQVASAPGSDIPMVGASGAVAGVMGAYLLLFPHARILTLVPIIFFFTFIEV
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
PAFIIIGWWVLIQFLNANWLGGGELRGGVAYFAHIGGFVAGIVGLWLFGAARRGGRPYRR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
W
C
>Mature Secondary Structure
MIPLKDYNPTRRLPVVSVALIILNCAAFLFDRYTGHYEPLIVETARGLVRTRQFVGGLSA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
DYSLVPAVLTSHPLLALPTIITSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRFRFVVFY
CHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHH
LGCGAVAALAQVASAPGSDIPMVGASGAVAGVMGAYLLLFPHARILTLVPIIFFFTFIEV
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
PAFIIIGWWVLIQFLNANWLGGGELRGGVAYFAHIGGFVAGIVGLWLFGAARRGGRPYRR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
W
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA