BacMap

Definition	Geobacter sulfurreducens PCA chromosome, complete genome.
Accession	NC_002939
Length	3,814,139

Click here to switch to the map view.

The map label for this gene is yjgI [H]

Identifier: 39995908

GI number: 39995908

Start: 860404

End: 861120

Strand: Reverse

Name: yjgI [H]

Synonym: GSU0802

Alternate gene names: 39995908

Gene position: 861120-860404 (Counterclockwise)

Preceding gene: 39995909

Following gene: 39995907

Centisome position: 22.58

GC content: 67.09

Gene sequence:

>717_bases
ATGTCGCTCAACGATGCAAAGGTAGTAGTGATCGGCGGCAGTTCCGGCATGGGGCTCGCCGTGGCGAAGATGGCCGCGGA
CGAGGGGGCCCGGGTGGTGATTGCCGGCCGGTCGGAGGAGAAGCTCCGGCAGGCCGCGGACGAGATTCGCCAGCCGGTTG
AGACCCGCTCCCTTGACGTGACGCAGGAACAGGCCGTGCAGGCGTTTTTCGTCGAAACCGGCGAACTGGACCACTTGGTC
GTAACCGCGGCCACCGGCGTGGCGGGATCGTTCCTGGAGCTGGAAACCCCGTCGTTCCGCCAGATCTTCGACAGCAAGTT
CTGGGGTCAGTACTTTGCGGCCCGCTACGGGGCCCAGCGGATCAGGGAGGGGGGCTCGATCACCTTCTTTTCCGGCGTGG
CCGCGGCCAAGCCCGTGGACGGCCTTTCGGCGTACGCCGCAGTGAACGGCGCCGTGGAGGCCCTCTGCCGGAGCCTGGCC
GTGGAACTGGCGCCCCTGCGGGTGAACGCCGTCTCGCCGGGGATCGTGGATACTCCCGCCTATGCCGGCATGAGCCCCGC
CGAACGGAAGAGAATGTTCGATGCCCTCGCCGCCCGGCTCCCGGCCCGGCGGATCGGCAGGCCCGAAGACGTGGCCGCTG
CAGTGATCTCGCTTATGAAGAACGGTTATGTCACCGGATCAGTGGTGTACGTGGACGGAGGACACCGGCTGGTCTAG

Upstream 100 bases:

>100_bases
ACTCCATTTCGCTCAACCCCGATTCGATCCTCAAGATCACGATGAGGGTCCTGGAAATGGAGGAGCAGCTGGCGCAGCAG
GGGAACAAGAGGAGTTAGAC

Downstream 100 bases:

>100_bases
CAGACAGCCGGCGGTCGCGGACAGCCCCAGCGGCGCCGGGACCGCCGGCCCCCCCTGGCGGCTCCATCCGACACTCCCAC
CGGCAAGATCATTGCATTGT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSLNDAKVVVIGGSSGMGLAVAKMAADEGARVVIAGRSEEKLRQAADEIRQPVETRSLDVTQEQAVQAFFVETGELDHLV
VTAATGVAGSFLELETPSFRQIFDSKFWGQYFAARYGAQRIREGGSITFFSGVAAAKPVDGLSAYAAVNGAVEALCRSLA
VELAPLRVNAVSPGIVDTPAYAGMSPAERKRMFDALAARLPARRIGRPEDVAAAVISLMKNGYVTGSVVYVDGGHRLV

Sequences:

>Translated_238_residues
MSLNDAKVVVIGGSSGMGLAVAKMAADEGARVVIAGRSEEKLRQAADEIRQPVETRSLDVTQEQAVQAFFVETGELDHLV
VTAATGVAGSFLELETPSFRQIFDSKFWGQYFAARYGAQRIREGGSITFFSGVAAAKPVDGLSAYAAVNGAVEALCRSLA
VELAPLRVNAVSPGIVDTPAYAGMSPAERKRMFDALAARLPARRIGRPEDVAAAVISLMKNGYVTGSVVYVDGGHRLV
>Mature_237_residues
SLNDAKVVVIGGSSGMGLAVAKMAADEGARVVIAGRSEEKLRQAADEIRQPVETRSLDVTQEQAVQAFFVETGELDHLVV
TAATGVAGSFLELETPSFRQIFDSKFWGQYFAARYGAQRIREGGSITFFSGVAAAKPVDGLSAYAAVNGAVEALCRSLAV
ELAPLRVNAVSPGIVDTPAYAGMSPAERKRMFDALAARLPARRIGRPEDVAAAVISLMKNGYVTGSVVYVDGGHRLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=30.1652892561983, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI4503817, Length=234, Percent_Identity=30.7692307692308, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=27.0588235294118, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=28.6885245901639, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=27.2, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=28.2157676348548, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI59889578, Length=224, Percent_Identity=31.25, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=28.4552845528455, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI4758504, Length=250, Percent_Identity=26.4, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=29.0836653386454, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI10190704, Length=261, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI2367365, Length=233, Percent_Identity=33.4763948497854, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=30.4, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=28.8537549407115, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=29.3650793650794, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082100, Length=247, Percent_Identity=28.3400809716599, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=26.9387755102041, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789378, Length=249, Percent_Identity=28.1124497991968, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=24.2914979757085, Blast_Score=68, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=26.7175572519084, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=28.8973384030418, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=29.1497975708502, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=27.2373540856031, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=30.5555555555556, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=255, Percent_Identity=27.843137254902, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=26.7175572519084, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=255, Percent_Identity=31.3725490196078, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=27.9835390946502, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=245, Percent_Identity=26.530612244898, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=24.0157480314961, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=25.8555133079848, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=29.3172690763052, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=26.5384615384615, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=29.9242424242424, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=258, Percent_Identity=28.6821705426357, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=236, Percent_Identity=29.2372881355932, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=244, Percent_Identity=25, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=259, Percent_Identity=27.7992277992278, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=242, Percent_Identity=26.4462809917355, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=26.1224489795918, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=24.9056603773585, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=222, Percent_Identity=28.3783783783784, Blast_Score=86, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24643142, Length=237, Percent_Identity=30.8016877637131, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21355319, Length=240, Percent_Identity=30.8333333333333, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=30.5220883534137, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=29.0322580645161, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=27.6, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=27.734375, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24644339, Length=244, Percent_Identity=29.0983606557377, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=25.3061224489796, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24644337, Length=172, Percent_Identity=31.3953488372093, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25121; Mature: 24990

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNDAKVVVIGGSSGMGLAVAKMAADEGARVVIAGRSEEKLRQAADEIRQPVETRSLDV
CCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCHHHCCCCC
TQEQAVQAFFVETGELDHLVVTAATGVAGSFLELETPSFRQIFDSKFWGQYFAARYGAQR
CHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
IREGGSITFFSGVAAAKPVDGLSAYAAVNGAVEALCRSLAVELAPLRVNAVSPGIVDTPA
HHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCC
YAGMSPAERKRMFDALAARLPARRIGRPEDVAAAVISLMKNGYVTGSVVYVDGGHRLV
CCCCCHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
>Mature Secondary Structure 
SLNDAKVVVIGGSSGMGLAVAKMAADEGARVVIAGRSEEKLRQAADEIRQPVETRSLDV
CCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCHHHCCCCC
TQEQAVQAFFVETGELDHLVVTAATGVAGSFLELETPSFRQIFDSKFWGQYFAARYGAQR
CHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
IREGGSITFFSGVAAAKPVDGLSAYAAVNGAVEALCRSLAVELAPLRVNAVSPGIVDTPA
HHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCC
YAGMSPAERKRMFDALAARLPARRIGRPEDVAAAVISLMKNGYVTGSVVYVDGGHRLV
CCCCCHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]