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The map label for this gene is ychF [H]

Identifier: 39995770

GI number: 39995770

Start: 700226

End: 701320

Strand: Direct

Name: ychF [H]

Synonym: GSU0664

Alternate gene names: 39995770

Gene position: 700226-701320 (Clockwise)

Preceding gene: 39995769

Following gene: 39995771

Centisome position: 18.36

GC content: 61.55

Gene sequence:

>1095_bases
ATGGGTTTCAACTGCGGCATCGTGGGACTCCCCAACGTGGGAAAGTCGACCATCTTCAATGCTCTTACCTCGGCGGGGGC
CGAGTCGGCCAACTATCCCTTCTGCACCATCGATCCCAACGTCGGCATCGTGCAGGTTCCGGATGTACGTCTTGACCGGC
TGGCGGAGATCGTCAGCCCCGAGCGCATCCTGCCGACCACCATCGAGTTTGTCGATATAGCCGGCCTGGTAAAGGGGGCC
AGCCAGGGGGAGGGGCTCGGCAACCAGTTTCTCGGCCATATCCGCTCCGTAGATGCCATTGTCCACGTGGTGCGCTGCTT
TGAGGACGAGAACGTGGTGCACGTGAGCGGCAGCGTCGATCCCTTGCGGGATATCGACATCATTCAGACCGAGCTGGCAC
TTGCCGATCTGGACAGCGTCGACAAAAAGCTGCAGCGCGTCGAAAAGCAGGCGAAAAGCGGTGACAAGCGGCTCAAGGAG
GAAAGCGAATTCTACGCTCGCCTCAAGGCGGCCCTGGAGCAGGGAATCCCTGCGCGCCACGTCCAGGTGGCCGACGAAGA
GCTCCCCTGGCTGCGGGACCTCCATCTGCTGACCGACAAGCCGGTGCTCTATGTGGCCAATGTGGCCGAGGACGACCTTG
ACGGAGCTCACCCGGCGGTGGCCAAGGTGCGAGAGCTGGCCGAGCGGGAGGGGGCGCGGGTGGTCACCATCTGCGGTCGG
ATCGAGGCTGAGATCGCCGAGCTGGATGGGGATGAAAAACGGGTGTTCCTCGAGGAGATGGGGCTTGCCGAGTCGGGACT
CGACCGCCTGATCCGCATGGGCTACGAACTGCTCGGGCTCATCACCTATTTCACTGCCGGCAAAAAAGAAGTCCGGGCCT
GGACGATTCCGACCGGCACCAAGGCGCCCCAGGCGGCAGGCGTTATCCACACCGATTTTGAAAAAGGGTTCATTCGGGCA
GAAGTCATTGCCTACGCCGACTACATCGCGGCGGGCGGCGAGACCGGGGCTAAGGAAAAAGGGCTCATGCGGCTCGAAGG
GAAGGAATACGTGGTTCAGGATGGTGATGTCATGCATTTCCGGTTCAACGTCTGA

Upstream 100 bases:

>100_bases
CAGCCGGACTCCCCAAGACCATGAGTCTGTATAACAACAAGGATCTTCTTGCCCCCTGACAACGAGGGGGGGCGGATATC
TTCCTGAAGGAAGGATGCAC

Downstream 100 bases:

>100_bases
GCGGGGCGCACCTACGGTCATGCGGGATATTCTCCTTGAACTTCAAGGCGTTTTGTAGTACATAATTACTTTTCCACTGC
AGCTTGGGCTGCAACTCCTT

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MGFNCGIVGLPNVGKSTIFNALTSAGAESANYPFCTIDPNVGIVQVPDVRLDRLAEIVSPERILPTTIEFVDIAGLVKGA
SQGEGLGNQFLGHIRSVDAIVHVVRCFEDENVVHVSGSVDPLRDIDIIQTELALADLDSVDKKLQRVEKQAKSGDKRLKE
ESEFYARLKAALEQGIPARHVQVADEELPWLRDLHLLTDKPVLYVANVAEDDLDGAHPAVAKVRELAEREGARVVTICGR
IEAEIAELDGDEKRVFLEEMGLAESGLDRLIRMGYELLGLITYFTAGKKEVRAWTIPTGTKAPQAAGVIHTDFEKGFIRA
EVIAYADYIAAGGETGAKEKGLMRLEGKEYVVQDGDVMHFRFNV

Sequences:

>Translated_364_residues
MGFNCGIVGLPNVGKSTIFNALTSAGAESANYPFCTIDPNVGIVQVPDVRLDRLAEIVSPERILPTTIEFVDIAGLVKGA
SQGEGLGNQFLGHIRSVDAIVHVVRCFEDENVVHVSGSVDPLRDIDIIQTELALADLDSVDKKLQRVEKQAKSGDKRLKE
ESEFYARLKAALEQGIPARHVQVADEELPWLRDLHLLTDKPVLYVANVAEDDLDGAHPAVAKVRELAEREGARVVTICGR
IEAEIAELDGDEKRVFLEEMGLAESGLDRLIRMGYELLGLITYFTAGKKEVRAWTIPTGTKAPQAAGVIHTDFEKGFIRA
EVIAYADYIAAGGETGAKEKGLMRLEGKEYVVQDGDVMHFRFNV
>Mature_363_residues
GFNCGIVGLPNVGKSTIFNALTSAGAESANYPFCTIDPNVGIVQVPDVRLDRLAEIVSPERILPTTIEFVDIAGLVKGAS
QGEGLGNQFLGHIRSVDAIVHVVRCFEDENVVHVSGSVDPLRDIDIIQTELALADLDSVDKKLQRVEKQAKSGDKRLKEE
SEFYARLKAALEQGIPARHVQVADEELPWLRDLHLLTDKPVLYVANVAEDDLDGAHPAVAKVRELAEREGARVVTICGRI
EAEIAELDGDEKRVFLEEMGLAESGLDRLIRMGYELLGLITYFTAGKKEVRAWTIPTGTKAPQAAGVIHTDFEKGFIRAE
VIAYADYIAAGGETGAKEKGLMRLEGKEYVVQDGDVMHFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=365, Percent_Identity=46.027397260274, Blast_Score=323, Evalue=2e-88,
Organism=Homo sapiens, GI58761502, Length=227, Percent_Identity=40.0881057268723, Blast_Score=163, Evalue=2e-40,
Organism=Homo sapiens, GI24308117, Length=133, Percent_Identity=30.8270676691729, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1787454, Length=364, Percent_Identity=61.2637362637363, Blast_Score=461, Evalue=1e-131,
Organism=Escherichia coli, GI1789574, Length=129, Percent_Identity=32.5581395348837, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17509631, Length=362, Percent_Identity=45.0276243093923, Blast_Score=311, Evalue=3e-85,
Organism=Saccharomyces cerevisiae, GI6319499, Length=370, Percent_Identity=40.2702702702703, Blast_Score=258, Evalue=1e-69,
Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=36.9393139841689, Blast_Score=226, Evalue=3e-60,
Organism=Saccharomyces cerevisiae, GI6321649, Length=143, Percent_Identity=41.2587412587413, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24640873, Length=365, Percent_Identity=45.4794520547945, Blast_Score=310, Evalue=1e-84,
Organism=Drosophila melanogaster, GI24640877, Length=365, Percent_Identity=45.4794520547945, Blast_Score=310, Evalue=1e-84,
Organism=Drosophila melanogaster, GI24640875, Length=365, Percent_Identity=45.4794520547945, Blast_Score=310, Evalue=1e-84,
Organism=Drosophila melanogaster, GI24640879, Length=327, Percent_Identity=43.4250764525994, Blast_Score=256, Evalue=1e-68,
Organism=Drosophila melanogaster, GI24585318, Length=104, Percent_Identity=34.6153846153846, Blast_Score=72, Evalue=8e-13,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39806; Mature: 39675

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFNCGIVGLPNVGKSTIFNALTSAGAESANYPFCTIDPNVGIVQVPDVRLDRLAEIVSP
CCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHCC
ERILPTTIEFVDIAGLVKGASQGEGLGNQFLGHIRSVDAIVHVVRCFEDENVVHVSGSVD
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PLRDIDIIQTELALADLDSVDKKLQRVEKQAKSGDKRLKEESEFYARLKAALEQGIPARH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VQVADEELPWLRDLHLLTDKPVLYVANVAEDDLDGAHPAVAKVRELAEREGARVVTICGR
EEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECH
IEAEIAELDGDEKRVFLEEMGLAESGLDRLIRMGYELLGLITYFTAGKKEVRAWTIPTGT
HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
KAPQAAGVIHTDFEKGFIRAEVIAYADYIAAGGETGAKEKGLMRLEGKEYVVQDGDVMHF
CCCCCCCCEEECHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCEEEE
RFNV
EECC
>Mature Secondary Structure 
GFNCGIVGLPNVGKSTIFNALTSAGAESANYPFCTIDPNVGIVQVPDVRLDRLAEIVSP
CCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCHHHHHHHHHCC
ERILPTTIEFVDIAGLVKGASQGEGLGNQFLGHIRSVDAIVHVVRCFEDENVVHVSGSVD
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PLRDIDIIQTELALADLDSVDKKLQRVEKQAKSGDKRLKEESEFYARLKAALEQGIPARH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VQVADEELPWLRDLHLLTDKPVLYVANVAEDDLDGAHPAVAKVRELAEREGARVVTICGR
EEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECH
IEAEIAELDGDEKRVFLEEMGLAESGLDRLIRMGYELLGLITYFTAGKKEVRAWTIPTGT
HHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
KAPQAAGVIHTDFEKGFIRAEVIAYADYIAAGGETGAKEKGLMRLEGKEYVVQDGDVMHF
CCCCCCCCEEECHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCEEEE
RFNV
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]