Click here to switch to the map view.

The map label for this gene is ytqA [H]

Identifier: 39995693

GI number: 39995693

Start: 619853

End: 620812

Strand: Reverse

Name: ytqA [H]

Synonym: GSU0586

Alternate gene names: 39995693

Gene position: 620812-619853 (Counterclockwise)

Preceding gene: 39995694

Following gene: 39995692

Centisome position: 16.28

GC content: 64.58

Gene sequence:

>960_bases
ATGTCAGACCTGTTCATACATCCCGAGCTTCGCTTCCACTCCTACGGCACCTGGCTGCGCCGCCGCTTCGGCTGCAACGT
GAGCAAGGTGAACGTGGACGGCGGCTTCACCTGCCCCAATCGCGACGGCAGCCGCGGCACCGGCGGCTGCATCTACTGCG
ACAACGCCTCCTTTTCCCCCGGCGGCACCGTCCCCGACAAGTCGATCGAACTGCAGATGGCCGAGGGCATGGCCTACCAC
CGGCAACGGCTGGGAAGCGAGAAGTTCATCATCTACTTCCAGAAGTTCACCAACACCTACGCGCCGGCTGCCCGTTTGCG
GGACCTGTATACCCGCGCCCTGTCCCATCCCGACGTGGTGGGGATTTCGGTGGGCACCAGGCCCGACGCCCTGGCGGACG
AGGCCCTTGAGCTACTGGCCGATCTGGCGCAGGAGCACTACGTCTGCATTGAACTGGGGCTTCAGTCCATGGACGACGCC
ATCCTGGAGCGGATCAACCGGGGCCACACCCTGGACGAGTACCTCCGAACCGTGGATCGGATCGCGGGACGCGGCATCGC
CCTCTGCACCCATCTCATTTACGGCTTTCCCGGCGAAACCCGCGAAGGATTCCTGAAAACCGCGCACCTGCTGGCAGGAC
TCCCGGTGGACTCGGTGAAGCTCCACCAGCTCCATGCGGTAAAGGGAACCCGTCTGGCCGAACTCTACCATCGGCGCGAA
TTCGTGCCGATAACCCTTGCTGAGTACGTGACCACGGCCTGCGACTTCCTGGAGCTTCTTCCCCCCCGCATTGCCGTCCA
GCGACTCTACGGCTCGGCCCCCCTCGCCATCCGGGTGGCGCCCACCTGGAACCTGAAGAACAACCAGATGTGGTACGCAA
TCGTGAACGAGCTGCGTCGGCGCGGCACCTGGCAGGGGTGCAGGCTCGACCGGGAGCACTGCCGCGTCGGCAACCTGTAG

Upstream 100 bases:

>100_bases
GGTTGCCCTGATTTCTGCCATCATCGCCGACCCGGACCCCAGGGAACGCGCCCGGGCGCTCCTTGCGCTCCTGCCGCCCC
GAACCCGAGACGAGTAAGCC

Downstream 100 bases:

>100_bases
ACCTCATCCACCCCAAGGAGGCACGAGATGAAAACCGCCAGGCTTTCCCCGTCGGGGAATGAGTTTCCCATCGGCAAGAT
ACTCTGCATCGGCCGCAATT

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSDLFIHPELRFHSYGTWLRRRFGCNVSKVNVDGGFTCPNRDGSRGTGGCIYCDNASFSPGGTVPDKSIELQMAEGMAYH
RQRLGSEKFIIYFQKFTNTYAPAARLRDLYTRALSHPDVVGISVGTRPDALADEALELLADLAQEHYVCIELGLQSMDDA
ILERINRGHTLDEYLRTVDRIAGRGIALCTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAELYHRRE
FVPITLAEYVTTACDFLELLPPRIAVQRLYGSAPLAIRVAPTWNLKNNQMWYAIVNELRRRGTWQGCRLDREHCRVGNL

Sequences:

>Translated_319_residues
MSDLFIHPELRFHSYGTWLRRRFGCNVSKVNVDGGFTCPNRDGSRGTGGCIYCDNASFSPGGTVPDKSIELQMAEGMAYH
RQRLGSEKFIIYFQKFTNTYAPAARLRDLYTRALSHPDVVGISVGTRPDALADEALELLADLAQEHYVCIELGLQSMDDA
ILERINRGHTLDEYLRTVDRIAGRGIALCTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAELYHRRE
FVPITLAEYVTTACDFLELLPPRIAVQRLYGSAPLAIRVAPTWNLKNNQMWYAIVNELRRRGTWQGCRLDREHCRVGNL
>Mature_318_residues
SDLFIHPELRFHSYGTWLRRRFGCNVSKVNVDGGFTCPNRDGSRGTGGCIYCDNASFSPGGTVPDKSIELQMAEGMAYHR
QRLGSEKFIIYFQKFTNTYAPAARLRDLYTRALSHPDVVGISVGTRPDALADEALELLADLAQEHYVCIELGLQSMDDAI
LERINRGHTLDEYLRTVDRIAGRGIALCTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAELYHRREF
VPITLAEYVTTACDFLELLPPRIAVQRLYGSAPLAIRVAPTWNLKNNQMWYAIVNELRRRGTWQGCRLDREHCRVGNL

Specific function: Unknown

COG id: COG1242

COG function: function code R; Predicted Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI2367204, Length=271, Percent_Identity=38.3763837638376, Blast_Score=195, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 35977; Mature: 35845

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFIHPELRFHSYGTWLRRRFGCNVSKVNVDGGFTCPNRDGSRGTGGCIYCDNASFSP
CCCEEECCCCEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC
GGTVPDKSIELQMAEGMAYHRQRLGSEKFIIYFQKFTNTYAPAARLRDLYTRALSHPDVV
CCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHCCCCCEE
GISVGTRPDALADEALELLADLAQEHYVCIELGLQSMDDAILERINRGHTLDEYLRTVDR
EEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHH
IAGRGIALCTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAELYHRRE
HHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCC
FVPITLAEYVTTACDFLELLPPRIAVQRLYGSAPLAIRVAPTWNLKNNQMWYAIVNELRR
CCEEEHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
RGTWQGCRLDREHCRVGNL
CCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure 
SDLFIHPELRFHSYGTWLRRRFGCNVSKVNVDGGFTCPNRDGSRGTGGCIYCDNASFSP
CCEEECCCCEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC
GGTVPDKSIELQMAEGMAYHRQRLGSEKFIIYFQKFTNTYAPAARLRDLYTRALSHPDVV
CCCCCCCCEEEEHHHHHHHHHHHCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHCCCCCEE
GISVGTRPDALADEALELLADLAQEHYVCIELGLQSMDDAILERINRGHTLDEYLRTVDR
EEECCCCCCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHH
IAGRGIALCTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAELYHRRE
HHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCC
FVPITLAEYVTTACDFLELLPPRIAVQRLYGSAPLAIRVAPTWNLKNNQMWYAIVNELRR
CCEEEHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
RGTWQGCRLDREHCRVGNL
CCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]