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The map label for this gene is clpV1 [H]

Identifier: 39995541

GI number: 39995541

Start: 462307

End: 464934

Strand: Direct

Name: clpV1 [H]

Synonym: GSU0433

Alternate gene names: 39995541

Gene position: 462307-464934 (Clockwise)

Preceding gene: 39995540

Following gene: 39995543

Centisome position: 12.12

GC content: 68.87

Gene sequence:

>2628_bases
GTGCTGACCGTCGACCTTACCGCTCTTCTCAAGCGACTCAACCCCCTCTGCACCCGGGTACTGGAGGGGGCCGCAGGACT
CTGCGTGGCCAGAGGGCACTACGAAGTGACTGTTGAACACTTCCTGGCCAGGTTGCTCGATGAGGCGGGGGGGGACCTTG
TTGCCGTTCTGCGGAACTCTAACATCGACGCCTCCCCGCTGAAGATCGGAGTCGTCCGGGTTCTCGACGAGTTGCCCACC
GGCAACGGGGGGCGGCCGGTCTTCTCCCCGATCCTCCTGGAGTGGCTCCAGGCGGGGTGGCTCACGGCCTCCCTCGATCT
GAACGAGGAGCGGGTCCGCTCCGGAGCGCTCTTCGCGGCGCTCTTGGCCCGGCCGCTGCGGTTCGCGGCGGGCCGCTACG
TGGACCAGCTCATGCCCGTGGGACGGGAGGGGCTTCTCTCCGGCTTTTCGCGCGCTGTTTCCGGCTCGGAGGAGAACTCC
TGCATGGGCGGCGACACCGCTTCCGTCGCCGGGCCCGGCCGGGATGGCACGGCACTTTCCCGCTTCTGCACCGACTTCAC
CGCACGAGCGGCCGAGGGGGGCATGGACCCGGTCTTCGGCCGTGATCGGGAGATCGGCCGGATGATCGACATCCTGGCCC
GGCGGCGGAAGAACAACCCCATCGTGGTGGGAGAGGCGGGGGTCGGCAAGACCGCCGTGGTGGAGGGGCTGGCACTCCGT
ATCGTTGAGGGGGAGGTGCCGGAGGCATTGCGGGAGGTGAGGCTCCTGGGGCTTGATCTCGGCCTGCTCCAGGCGGGGGC
AGGGGTGAAAGGGGAGTTCGAGAGCCGTCTGAAGAGCGTTATCGAAGAGGTAAAGGGGGCTTCCCGGCCGGTGATTCTCT
TTATCGATGAGGCCCACACCCTGATCGGTGCCGGCAACCAGGCGGGCGGGGGTGATGCCGCCAACCTTCTGAAGCCGGCC
CTGGCCCGGGGTGAGCTGCGCACCATAGCCGCCACCACCTGGAGCGAATACAAGAAATATTTCGAGAAGGATGCCGCCTT
GGCCAGGCGCTTCCAGCCGGTGAAGCTGGACGAACCGTCGGTGGAGACGGCGGTGCTGATCCTGCGGGGCCTCAAGGATA
CGTACGAGGCGGCCCATGGGGTCACCATCCGGGATGACGCAGTCCGGGCGGCGGCGGAGCTCTCGTCCCGCTACCTGTCG
GGCCGGCAGCTGCCGGACAAGGCGGTGGATCTCCTTGATACGGCTGCGGCCCGGGTGAAGCTCCTGCTCACCGGCAAGCC
GGGAAGGGTAGAGGAGGCGGAGCGGCGCATCCAGGCCCTGGAGCGGGAAGAGGCCGCCCTCCGCCGTGATCGGCTCCAGG
GGCGGCCGGAGGACGAAGGACGGCTGGCGGTGCTGAAGGAGGAGCTGGCGCTGTTGCGGGAGGAGCTGGCTGCCGTAACG
GCTCGCTGGCACCGGGAACGAGAGCTGGCCGGGGCGGTGGTGGCCCTGCGGAACGAGGCAGCGGAGGGCCGTGACGCAGG
TGGGGACGCAGTGGGGCTGAAGATGGCGGAACCCGCGGCAAAGCTGGCGGAAGTCCAGGGGGATGAGCCGCTGGTCAGGA
TCGAGGTGGACCCGGAGGTGGTTGCGCAGGTGGTGGCCGACTGGACCGGCATTCCCCTAGGGCGCCTCCGCAAGGACCGG
ACCGCCGGGGTGCTTGCCCTGGAAGAGGGCCTGCGCCGGCGCATCCGGGGGCAGGAACCGGCGCTGGCCGCCGTGGCCGA
GGTGCTCCGTTCCTCGGCTGCTGGCCTCAAGGACCCGCGCCAGCCTCTGGGGGTCTTCCTGCTTGTCGGCCCCTCCGGCG
TCGGCAAGACCGAAACCGCCGTGGCCGTGGCCGATCTTCTTTTCGGCGGCGAACGGTTCCTCACCGTCATCAACATGAGC
GAATTTCAGGAGCGCCACACCACCAGCCGTCTCATCGGCTCGCCGCCGGGGTACGTGGGGTATGGTGAGGGCGGCGTCCT
TACCGAGGCGGTCCGCCGCAGCCCCTACTCGGCGGTGCTGCTGGACGAGGTGGAAAAAGCCCACCCCGACGTCCTCAATC
TCTTTTACCAGGTGTTCGACAAGGGGATGCTGGCCGACGGGGAGGGGCGGGTGATCGACTTCGCCAACACGGTCATCTTT
CTGACGAGCAATCTGGCGGCGGATGTCGTCGTCTCGCGCTGCGCGGAAGAGCCGCAGCCCACGACAGAGGAGCTGGCCGC
CGCCATCCGCCCCCATCTCGCGCGGCACTTCAAACCGGCGCTCCTGGCCCGCATGACCGTGGTCCCCTACCTGACCCTGG
CGCCGGACAGCCTGGAGGAGATCGTGGGCCTCAAGCTCGGCCGGGTGGCGGAGCGGCTCCGGGAGAACAGCCGAACGGAG
CTTGCGTGGACCCCGGCGGTTGCGGCCCGGCTCGCTGCCCGTTGCTCCGAAGTGGAGAGCGGCGCCAGGGCCATCGACCA
TATCCTGCGCGGAACCCTCCTGCCGCTCCTCTCCCGGGAGATCCTGGCGCGGATCGGCGGAGGAGAGGAGCTGGAGGCAA
TCCGGCTCGATGTAGCAGCCGACGGTTCCTTTACCGTCGGCTGTGGGGACGGTGCGGCGGTCCGGTGA

Upstream 100 bases:

>100_bases
GGGGGCACGGGTCGGATGGGACACCTGGCTTGGTGTCGCAGCCGGCGAATCCCTGCCTTGCGTTGTATTTCCCGGACATT
TTCCCTAAGGAGACCCTTCC

Downstream 100 bases:

>100_bases
CCGGAGGCGTCAAACGCGGTACTGCTCGATGCAGGTTTCGGAGAAGGTGTGGGAGACCGTGAGCATCTGTTCGCTGCCGT
CGACCGTGACCTTGATCCGG

Product: clpB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 875; Mature: 875

Protein sequence:

>875_residues
MLTVDLTALLKRLNPLCTRVLEGAAGLCVARGHYEVTVEHFLARLLDEAGGDLVAVLRNSNIDASPLKIGVVRVLDELPT
GNGGRPVFSPILLEWLQAGWLTASLDLNEERVRSGALFAALLARPLRFAAGRYVDQLMPVGREGLLSGFSRAVSGSEENS
CMGGDTASVAGPGRDGTALSRFCTDFTARAAEGGMDPVFGRDREIGRMIDILARRRKNNPIVVGEAGVGKTAVVEGLALR
IVEGEVPEALREVRLLGLDLGLLQAGAGVKGEFESRLKSVIEEVKGASRPVILFIDEAHTLIGAGNQAGGGDAANLLKPA
LARGELRTIAATTWSEYKKYFEKDAALARRFQPVKLDEPSVETAVLILRGLKDTYEAAHGVTIRDDAVRAAAELSSRYLS
GRQLPDKAVDLLDTAAARVKLLLTGKPGRVEEAERRIQALEREEAALRRDRLQGRPEDEGRLAVLKEELALLREELAAVT
ARWHRERELAGAVVALRNEAAEGRDAGGDAVGLKMAEPAAKLAEVQGDEPLVRIEVDPEVVAQVVADWTGIPLGRLRKDR
TAGVLALEEGLRRRIRGQEPALAAVAEVLRSSAAGLKDPRQPLGVFLLVGPSGVGKTETAVAVADLLFGGERFLTVINMS
EFQERHTTSRLIGSPPGYVGYGEGGVLTEAVRRSPYSAVLLDEVEKAHPDVLNLFYQVFDKGMLADGEGRVIDFANTVIF
LTSNLAADVVVSRCAEEPQPTTEELAAAIRPHLARHFKPALLARMTVVPYLTLAPDSLEEIVGLKLGRVAERLRENSRTE
LAWTPAVAARLAARCSEVESGARAIDHILRGTLLPLLSREILARIGGGEELEAIRLDVAADGSFTVGCGDGAAVR

Sequences:

>Translated_875_residues
MLTVDLTALLKRLNPLCTRVLEGAAGLCVARGHYEVTVEHFLARLLDEAGGDLVAVLRNSNIDASPLKIGVVRVLDELPT
GNGGRPVFSPILLEWLQAGWLTASLDLNEERVRSGALFAALLARPLRFAAGRYVDQLMPVGREGLLSGFSRAVSGSEENS
CMGGDTASVAGPGRDGTALSRFCTDFTARAAEGGMDPVFGRDREIGRMIDILARRRKNNPIVVGEAGVGKTAVVEGLALR
IVEGEVPEALREVRLLGLDLGLLQAGAGVKGEFESRLKSVIEEVKGASRPVILFIDEAHTLIGAGNQAGGGDAANLLKPA
LARGELRTIAATTWSEYKKYFEKDAALARRFQPVKLDEPSVETAVLILRGLKDTYEAAHGVTIRDDAVRAAAELSSRYLS
GRQLPDKAVDLLDTAAARVKLLLTGKPGRVEEAERRIQALEREEAALRRDRLQGRPEDEGRLAVLKEELALLREELAAVT
ARWHRERELAGAVVALRNEAAEGRDAGGDAVGLKMAEPAAKLAEVQGDEPLVRIEVDPEVVAQVVADWTGIPLGRLRKDR
TAGVLALEEGLRRRIRGQEPALAAVAEVLRSSAAGLKDPRQPLGVFLLVGPSGVGKTETAVAVADLLFGGERFLTVINMS
EFQERHTTSRLIGSPPGYVGYGEGGVLTEAVRRSPYSAVLLDEVEKAHPDVLNLFYQVFDKGMLADGEGRVIDFANTVIF
LTSNLAADVVVSRCAEEPQPTTEELAAAIRPHLARHFKPALLARMTVVPYLTLAPDSLEEIVGLKLGRVAERLRENSRTE
LAWTPAVAARLAARCSEVESGARAIDHILRGTLLPLLSREILARIGGGEELEAIRLDVAADGSFTVGCGDGAAVR
>Mature_875_residues
MLTVDLTALLKRLNPLCTRVLEGAAGLCVARGHYEVTVEHFLARLLDEAGGDLVAVLRNSNIDASPLKIGVVRVLDELPT
GNGGRPVFSPILLEWLQAGWLTASLDLNEERVRSGALFAALLARPLRFAAGRYVDQLMPVGREGLLSGFSRAVSGSEENS
CMGGDTASVAGPGRDGTALSRFCTDFTARAAEGGMDPVFGRDREIGRMIDILARRRKNNPIVVGEAGVGKTAVVEGLALR
IVEGEVPEALREVRLLGLDLGLLQAGAGVKGEFESRLKSVIEEVKGASRPVILFIDEAHTLIGAGNQAGGGDAANLLKPA
LARGELRTIAATTWSEYKKYFEKDAALARRFQPVKLDEPSVETAVLILRGLKDTYEAAHGVTIRDDAVRAAAELSSRYLS
GRQLPDKAVDLLDTAAARVKLLLTGKPGRVEEAERRIQALEREEAALRRDRLQGRPEDEGRLAVLKEELALLREELAAVT
ARWHRERELAGAVVALRNEAAEGRDAGGDAVGLKMAEPAAKLAEVQGDEPLVRIEVDPEVVAQVVADWTGIPLGRLRKDR
TAGVLALEEGLRRRIRGQEPALAAVAEVLRSSAAGLKDPRQPLGVFLLVGPSGVGKTETAVAVADLLFGGERFLTVINMS
EFQERHTTSRLIGSPPGYVGYGEGGVLTEAVRRSPYSAVLLDEVEKAHPDVLNLFYQVFDKGMLADGEGRVIDFANTVIF
LTSNLAADVVVSRCAEEPQPTTEELAAAIRPHLARHFKPALLARMTVVPYLTLAPDSLEEIVGLKLGRVAERLRENSRTE
LAWTPAVAARLAARCSEVESGARAIDHILRGTLLPLLSREILARIGGGEELEAIRLDVAADGSFTVGCGDGAAVR

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=290, Percent_Identity=36.2068965517241, Blast_Score=172, Evalue=1e-42,
Organism=Escherichia coli, GI1788943, Length=864, Percent_Identity=39.8148148148148, Blast_Score=560, Evalue=1e-160,
Organism=Escherichia coli, GI1787109, Length=249, Percent_Identity=50.2008032128514, Blast_Score=257, Evalue=2e-69,
Organism=Saccharomyces cerevisiae, GI6320464, Length=705, Percent_Identity=40.4255319148936, Blast_Score=477, Evalue=1e-135,
Organism=Saccharomyces cerevisiae, GI6323002, Length=689, Percent_Identity=38.6066763425254, Blast_Score=457, Evalue=1e-129,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 93822; Mature: 93822

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTVDLTALLKRLNPLCTRVLEGAAGLCVARGHYEVTVEHFLARLLDEAGGDLVAVLRNS
CEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEHHHHHHHHHHHCCCCEEEEEECC
NIDASPLKIGVVRVLDELPTGNGGRPVFSPILLEWLQAGWLTASLDLNEERVRSGALFAA
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
LLARPLRFAAGRYVDQLMPVGREGLLSGFSRAVSGSEENSCMGGDTASVAGPGRDGTALS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
RFCTDFTARAAEGGMDPVFGRDREIGRMIDILARRRKNNPIVVGEAGVGKTAVVEGLALR
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHE
IVEGEVPEALREVRLLGLDLGLLQAGAGVKGEFESRLKSVIEEVKGASRPVILFIDEAHT
EECCHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCH
LIGAGNQAGGGDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQPVKLDEPS
HEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
VETAVLILRGLKDTYEAAHGVTIRDDAVRAAAELSSRYLSGRQLPDKAVDLLDTAAARVK
HHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEE
LLLTGKPGRVEEAERRIQALEREEAALRRDRLQGRPEDEGRLAVLKEELALLREELAAVT
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ARWHRERELAGAVVALRNEAAEGRDAGGDAVGLKMAEPAAKLAEVQGDEPLVRIEVDPEV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHCCCCCCEEEEECCHHH
VAQVVADWTGIPLGRLRKDRTAGVLALEEGLRRRIRGQEPALAAVAEVLRSSAAGLKDPR
HHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
QPLGVFLLVGPSGVGKTETAVAVADLLFGGERFLTVINMSEFQERHTTSRLIGSPPGYVG
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHEEEECHHHHHHHHHHHHHCCCCCCCCC
YGEGGVLTEAVRRSPYSAVLLDEVEKAHPDVLNLFYQVFDKGMLADGEGRVIDFANTVIF
CCCCCHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCCCEEEECCEEEE
LTSNLAADVVVSRCAEEPQPTTEELAAAIRPHLARHFKPALLARMTVVPYLTLAPDSLEE
EECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCEEEECCHHHHH
IVGLKLGRVAERLRENSRTELAWTPAVAARLAARCSEVESGARAIDHILRGTLLPLLSRE
HHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILARIGGGEELEAIRLDVAADGSFTVGCGDGAAVR
HHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCC
>Mature Secondary Structure
MLTVDLTALLKRLNPLCTRVLEGAAGLCVARGHYEVTVEHFLARLLDEAGGDLVAVLRNS
CEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEHHHHHHHHHHHCCCCEEEEEECC
NIDASPLKIGVVRVLDELPTGNGGRPVFSPILLEWLQAGWLTASLDLNEERVRSGALFAA
CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
LLARPLRFAAGRYVDQLMPVGREGLLSGFSRAVSGSEENSCMGGDTASVAGPGRDGTALS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
RFCTDFTARAAEGGMDPVFGRDREIGRMIDILARRRKNNPIVVGEAGVGKTAVVEGLALR
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHE
IVEGEVPEALREVRLLGLDLGLLQAGAGVKGEFESRLKSVIEEVKGASRPVILFIDEAHT
EECCHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCH
LIGAGNQAGGGDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQPVKLDEPS
HEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
VETAVLILRGLKDTYEAAHGVTIRDDAVRAAAELSSRYLSGRQLPDKAVDLLDTAAARVK
HHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEE
LLLTGKPGRVEEAERRIQALEREEAALRRDRLQGRPEDEGRLAVLKEELALLREELAAVT
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ARWHRERELAGAVVALRNEAAEGRDAGGDAVGLKMAEPAAKLAEVQGDEPLVRIEVDPEV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHCCCCCCEEEEECCHHH
VAQVVADWTGIPLGRLRKDRTAGVLALEEGLRRRIRGQEPALAAVAEVLRSSAAGLKDPR
HHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
QPLGVFLLVGPSGVGKTETAVAVADLLFGGERFLTVINMSEFQERHTTSRLIGSPPGYVG
CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHEEEECHHHHHHHHHHHHHCCCCCCCCC
YGEGGVLTEAVRRSPYSAVLLDEVEKAHPDVLNLFYQVFDKGMLADGEGRVIDFANTVIF
CCCCCHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCCCEEEECCEEEE
LTSNLAADVVVSRCAEEPQPTTEELAAAIRPHLARHFKPALLARMTVVPYLTLAPDSLEE
EECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCEEEECCHHHHH
IVGLKLGRVAERLRENSRTELAWTPAVAARLAARCSEVESGARAIDHILRGTLLPLLSRE
HHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILARIGGGEELEAIRLDVAADGSFTVGCGDGAAVR
HHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]