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The map label for this gene is fliN [H]

Identifier: 39995530

GI number: 39995530

Start: 452645

End: 452950

Strand: Direct

Name: fliN [H]

Synonym: GSU0422

Alternate gene names: 39995530

Gene position: 452645-452950 (Clockwise)

Preceding gene: 39995529

Following gene: 39995531

Centisome position: 11.87

GC content: 57.52

Gene sequence:

>306_bases
GTGAGCGACTTCACGAAAGAAGAAACCAAAGACGGTGAACTGGACCGCAAGAACCTGGAGTTCATTCTCGATATACCGCT
TCAGCTCACGGTGGAACTGGGCCGGACCAAGATCCTGGTCAAGGATGTGCTCCAGCTCAATCAGGGGGCGGTGGTGGAAT
TGACCAAGCTTGCCGGAGAGCCCTTGGACGTTTTCGTGAACTCCAAGCTCGTCGCCCGCGGCGAGGCGGTGGTGGTCAAC
GAGAAGTTCGGGGTCCGGCTCGTGGATATCGTCAGCCCCAACGAACGGGTGGAGAAAGTACTGTGA

Upstream 100 bases:

>100_bases
TCAAGGTCGGCGGGGTGCCCAAATTCACGGGAATGCCGGGCATACGCCACGGCAACAAGGCACTTCAGATCACGAACGTC
GTAGGCAAGGGAGAACAGCG

Downstream 100 bases:

>100_bases
AACAGCCGGCATCAGTTACGGCCCTGGCCCTGGCGGTCCCCGGCGTGGCCCGGGCCGCAGAGGCCGCCGGCGGAGCGAAT
TTCAGCTTCGCCACCGTGTT

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MSDFTKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAVVVN
EKFGVRLVDIVSPNERVEKVL

Sequences:

>Translated_101_residues
MSDFTKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAVVVN
EKFGVRLVDIVSPNERVEKVL
>Mature_100_residues
SDFTKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGEPLDVFVNSKLVARGEAVVVNE
KFGVRLVDIVSPNERVEKVL

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=84, Percent_Identity=52.3809523809524, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 11274; Mature: 11143

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFTKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGE
CCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEHHHHHHHHCCCCCEEEEECCCCC
PLDVFVNSKLVARGEAVVVNEKFGVRLVDIVSPNERVEKVL
CEEEEECCEEEECCCEEEEECCCCEEEEEEECCCHHHHHCC
>Mature Secondary Structure 
SDFTKEETKDGELDRKNLEFILDIPLQLTVELGRTKILVKDVLQLNQGAVVELTKLAGE
CCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEHHHHHHHHCCCCCEEEEECCCCC
PLDVFVNSKLVARGEAVVVNEKFGVRLVDIVSPNERVEKVL
CEEEEECCEEEECCCEEEEECCCCEEEEEEECCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]