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The map label for this gene is pal [H]

Identifier: 39995135

GI number: 39995135

Start: 34573

End: 35157

Strand: Reverse

Name: pal [H]

Synonym: GSU0024

Alternate gene names: 39995135

Gene position: 35157-34573 (Counterclockwise)

Preceding gene: 39995136

Following gene: 39995134

Centisome position: 0.92

GC content: 60.68

Gene sequence:

>585_bases
ATGTATTCTCGCACACTCGGTGTTGTTGCTCTGGCTTGCTTCGCCCTGTCTCTCGTCGGCGGCTGCGCAAAGAAGGAAAT
GGTTAAGCCCGACCAGGCCGCTCCGACGACTGCCGCCGCGCCCGTCTCGCCGGCGCCGCAGCCTGCCCAGCCCAAGGAAG
AACCGGTCAAAGCCCAGACCATAACTGAAGCCCCCGTAGCGGTGGCTTCGCAGGCATCTGACACCGCCGGCAGAGCTGAG
GCTGCCGAAACATCCCTTGAGCGCATCTATTTCGATTTCGACGCCTTCGTCCTCTCCCAGACCGCCCGCGACACGCTCTC
CCGCAATGCCGAGGCGTTGCTGAAGAAAATGCCCAACGCCAAGGTATCCATCGAAGGCCATTGCGATGAGCGGGGCTCCG
ACGAATACAACCTGGCCCTTGGTGAAAAACGGGCAAAAACGGCCATGAACTACCTGATCACCCTGGGAGTGCCGGCCGCA
CGGCTGTCGATCATCAGCTACGGCGAGGAGAAGCCTCTCGATCCCGGCCACACTGAAGAAGCCTGGGCGAAAAACCGGCG
GGACGAATTCGTGATTGTAAAATAG

Upstream 100 bases:

>100_bases
AACCCATTGAAAAAGCATCTCCATTATATATAATTGTTCGCGTTGACGCGGCGCGGGTCGTACCCGCCCGACCACTGCAT
TAACAAAAAGGAGAGGAACC

Downstream 100 bases:

>100_bases
TCCCGAAAGGGCTAGCACGGAGGGGAGCCGGTAACGGCTCCCTTTCTCTATGAAGACACCGTTGCTCCAGCAAAAGGAGA
CCGATTATCCCATGAAACAG

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MYSRTLGVVALACFALSLVGGCAKKEMVKPDQAAPTTAAAPVSPAPQPAQPKEEPVKAQTITEAPVAVASQASDTAGRAE
AAETSLERIYFDFDAFVLSQTARDTLSRNAEALLKKMPNAKVSIEGHCDERGSDEYNLALGEKRAKTAMNYLITLGVPAA
RLSIISYGEEKPLDPGHTEEAWAKNRRDEFVIVK

Sequences:

>Translated_194_residues
MYSRTLGVVALACFALSLVGGCAKKEMVKPDQAAPTTAAAPVSPAPQPAQPKEEPVKAQTITEAPVAVASQASDTAGRAE
AAETSLERIYFDFDAFVLSQTARDTLSRNAEALLKKMPNAKVSIEGHCDERGSDEYNLALGEKRAKTAMNYLITLGVPAA
RLSIISYGEEKPLDPGHTEEAWAKNRRDEFVIVK
>Mature_194_residues
MYSRTLGVVALACFALSLVGGCAKKEMVKPDQAAPTTAAAPVSPAPQPAQPKEEPVKAQTITEAPVAVASQASDTAGRAE
AAETSLERIYFDFDAFVLSQTARDTLSRNAEALLKKMPNAKVSIEGHCDERGSDEYNLALGEKRAKTAMNYLITLGVPAA
RLSIISYGEEKPLDPGHTEEAWAKNRRDEFVIVK

Specific function: Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=99, Percent_Identity=46.4646464646465, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 20807; Mature: 20807

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSRTLGVVALACFALSLVGGCAKKEMVKPDQAAPTTAAAPVSPAPQPAQPKEEPVKAQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ITEAPVAVASQASDTAGRAEAAETSLERIYFDFDAFVLSQTARDTLSRNAEALLKKMPNA
HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
KVSIEGHCDERGSDEYNLALGEKRAKTAMNYLITLGVPAARLSIISYGEEKPLDPGHTEE
EEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHH
AWAKNRRDEFVIVK
HHHHCCCCCEEEEC
>Mature Secondary Structure
MYSRTLGVVALACFALSLVGGCAKKEMVKPDQAAPTTAAAPVSPAPQPAQPKEEPVKAQT
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ITEAPVAVASQASDTAGRAEAAETSLERIYFDFDAFVLSQTARDTLSRNAEALLKKMPNA
HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
KVSIEGHCDERGSDEYNLALGEKRAKTAMNYLITLGVPAARLSIISYGEEKPLDPGHTEE
EEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHH
AWAKNRRDEFVIVK
HHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]