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The map label for this gene is ybgF [H]

Identifier: 39995134

GI number: 39995134

Start: 33645

End: 34481

Strand: Reverse

Name: ybgF [H]

Synonym: GSU0023

Alternate gene names: 39995134

Gene position: 34481-33645 (Counterclockwise)

Preceding gene: 39995135

Following gene: 39995132

Centisome position: 0.9

GC content: 60.69

Gene sequence:

>837_bases
ATGAAACAGTTGACCATGCCCTTGACGGCCCTCGCCCTTTTCACCCTCGGAGGGTGTGTCACCAACAGTGACCTGGACGT
TGTCCGGCGCGATCTAGACGAACTCAAAAACCGCCAGTTCCAGGTAGAGAAAGAGGTCGGCGGCGTCCGGACCGAGGCGA
CCGCACGCATTGAAAGCTCTTTCAAGGATCTGGATACGGAGCGGGCCGGAGTACGCAAGGGGCTGGCCGACCTGCAGGCG
GCCATGGACGGGATAAAGGTGGACATGCAGGTGCTCGCGGGCAAGGTGGACGACGTTGGGCTCGCCGCCAAGAAGCCGGG
CGACGATCTGATCCTCCTGCGAGAGGATCTGGAGCGCAGGCTCACGGCCTTTGACCAGCGACTGGCCAAGGCCGAGACAG
GGATCGAGGCGCTGCAGAAAAAGGTGGCCGAGCAGGCACCCTCGCCGAAGGAAACGGAAAAGCCGACTCCCGAAGCCCTG
TACCAGAAGGGACTCGACGCCTACCGGGCGGGAAATTACGGCGTTGCCCGCGAAAGCTTTACCCGCTTCCTGGAACAGCA
TCCCAAGCACGAACTGGCGGCCAACGCCCGGTACTGGACGGGCGAGACTTACTACAGCGAGAAGAAATTCGAACAGGCGA
TTCTGGAATTCCAGGAGGTCATCAAGAACTACCCGGGCAAGGAAAAGGTGCCGGCCGCCATGCTCAAGCAGGCAGCGGCC
TTCTCTGAGATCGGCGATGCCAAAAGCGCTCGCTTCGTCCTCCGTAAGCTTGCGGACGACTATCCCTCCTCGGAGGAGGC
TAAACGGGCAAAAGACAGGCTCAAGGAGCTAAAATGA

Upstream 100 bases:

>100_bases
GTAAAATAGTCCCGAAAGGGCTAGCACGGAGGGGAGCCGGTAACGGCTCCCTTTCTCTATGAAGACACCGTTGCTCCAGC
AAAAGGAGACCGATTATCCC

Downstream 100 bases:

>100_bases
AACAAGGCGGGGTTTTCACCCCGCCTTGTTTGTTTCTGTATCCTGACCAACGATGTTCTAGGCTGATTTTTTCTCGGATT
CAGGGCTGCCTGCAACCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MKQLTMPLTALALFTLGGCVTNSDLDVVRRDLDELKNRQFQVEKEVGGVRTEATARIESSFKDLDTERAGVRKGLADLQA
AMDGIKVDMQVLAGKVDDVGLAAKKPGDDLILLREDLERRLTAFDQRLAKAETGIEALQKKVAEQAPSPKETEKPTPEAL
YQKGLDAYRAGNYGVARESFTRFLEQHPKHELAANARYWTGETYYSEKKFEQAILEFQEVIKNYPGKEKVPAAMLKQAAA
FSEIGDAKSARFVLRKLADDYPSSEEAKRAKDRLKELK

Sequences:

>Translated_278_residues
MKQLTMPLTALALFTLGGCVTNSDLDVVRRDLDELKNRQFQVEKEVGGVRTEATARIESSFKDLDTERAGVRKGLADLQA
AMDGIKVDMQVLAGKVDDVGLAAKKPGDDLILLREDLERRLTAFDQRLAKAETGIEALQKKVAEQAPSPKETEKPTPEAL
YQKGLDAYRAGNYGVARESFTRFLEQHPKHELAANARYWTGETYYSEKKFEQAILEFQEVIKNYPGKEKVPAAMLKQAAA
FSEIGDAKSARFVLRKLADDYPSSEEAKRAKDRLKELK
>Mature_278_residues
MKQLTMPLTALALFTLGGCVTNSDLDVVRRDLDELKNRQFQVEKEVGGVRTEATARIESSFKDLDTERAGVRKGLADLQA
AMDGIKVDMQVLAGKVDDVGLAAKKPGDDLILLREDLERRLTAFDQRLAKAETGIEALQKKVAEQAPSPKETEKPTPEAL
YQKGLDAYRAGNYGVARESFTRFLEQHPKHELAANARYWTGETYYSEKKFEQAILEFQEVIKNYPGKEKVPAAMLKQAAA
FSEIGDAKSARFVLRKLADDYPSSEEAKRAKDRLKELK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=102, Percent_Identity=32.3529411764706, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31084; Mature: 31084

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQLTMPLTALALFTLGGCVTNSDLDVVRRDLDELKNRQFQVEKEVGGVRTEATARIESS
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEHHHHHCCCHHHHHHHHHHH
FKDLDTERAGVRKGLADLQAAMDGIKVDMQVLAGKVDDVGLAAKKPGDDLILLREDLERR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHH
LTAFDQRLAKAETGIEALQKKVAEQAPSPKETEKPTPEALYQKGLDAYRAGNYGVARESF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCCCCCHHHHHH
TRFLEQHPKHELAANARYWTGETYYSEKKFEQAILEFQEVIKNYPGKEKVPAAMLKQAAA
HHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
FSEIGDAKSARFVLRKLADDYPSSEEAKRAKDRLKELK
HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQLTMPLTALALFTLGGCVTNSDLDVVRRDLDELKNRQFQVEKEVGGVRTEATARIESS
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEHHHHHCCCHHHHHHHHHHH
FKDLDTERAGVRKGLADLQAAMDGIKVDMQVLAGKVDDVGLAAKKPGDDLILLREDLERR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHH
LTAFDQRLAKAETGIEALQKKVAEQAPSPKETEKPTPEALYQKGLDAYRAGNYGVARESF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCCCCCHHHHHH
TRFLEQHPKHELAANARYWTGETYYSEKKFEQAILEFQEVIKNYPGKEKVPAAMLKQAAA
HHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
FSEIGDAKSARFVLRKLADDYPSSEEAKRAKDRLKELK
HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]