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The map label for this gene is rplY

Identifier: 57235101

GI number: 57235101

Start: 1313785

End: 1314441

Strand: Direct

Name: rplY

Synonym: DET1454

Alternate gene names: 57235101

Gene position: 1313785-1314441 (Clockwise)

Preceding gene: 57233745

Following gene: 57233743

Centisome position: 89.39

GC content: 50.68

Gene sequence:

>657_bases
ATGACTGGTATCAGCCTGGCACTTAATCCCCGGCAGGTTTTCGGCAACAAAAACAAATTCCTGAGGGCTCAGGGAATAAC
CCCGGTCCACATCTTCGGTCACGGCCTGAAATCACTGGCACTTCAGGCAAACACCCAGGAACTTGAGTCTACCATCAGCC
GGGCGGGCAGTTCCCACCTGGTAAGCCTAAAACTGGATACGGACAAAAAGACCCGCAAGGCATTTATACGTGAAATACAG
CGCCACCCGGTAAAAGGCTATCTCCAGCACGTAGATTTTTACCAGATAAACCTGAAAGAGAAAGTAACAGCGGAAATCCC
CATCCATTTCAGCGGGGAGTCACCCCTTCTCAAAGAAAAAGGCCACAAACTGACCGCCCCCTTTACCCACCTTACGGTTG
AAGCCCTGCCGGATGACCTTCCGCCGGAAATACATATTGAGCTATCCCAGTTTGACAGTCCGGAAAAAGACCTTTACATA
AAAGATATCGTTCTGCCCGGCAATGCCCGCATACTGAACGAGCCTGACCTTCTGGTGGCCAAAGTAAGCGAAATCCACCT
TAAGGTTGAAACCCCGGTAACAGCCAGCCTGCCTGAAGAACCCGAAGAAAAACCGGCTGCCGCTGCCGAAGAAAAAGAAA
CCGCTGAAAAGGAATAA

Upstream 100 bases:

>100_bases
TTTATCCAAGGAGCCATTGACAAAGGAATAATCAGAGAGATACCCGGATTTTCTCAGCATAACAGGTAAAAAATTTTATC
TGATTTGAAGGAGGCACAAA

Downstream 100 bases:

>100_bases
AAATCCAACCCTTATGATAATAGATTTTCATACCCATATTTTCCCGCCCGAAATCATTGCAGCCCGGCAGGACTACGCCT
GCCGGGATAGCTGCCTGGGA

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MTGISLALNPRQVFGNKNKFLRAQGITPVHIFGHGLKSLALQANTQELESTISRAGSSHLVSLKLDTDKKTRKAFIREIQ
RHPVKGYLQHVDFYQINLKEKVTAEIPIHFSGESPLLKEKGHKLTAPFTHLTVEALPDDLPPEIHIELSQFDSPEKDLYI
KDIVLPGNARILNEPDLLVAKVSEIHLKVETPVTASLPEEPEEKPAAAAEEKETAEKE

Sequences:

>Translated_218_residues
MTGISLALNPRQVFGNKNKFLRAQGITPVHIFGHGLKSLALQANTQELESTISRAGSSHLVSLKLDTDKKTRKAFIREIQ
RHPVKGYLQHVDFYQINLKEKVTAEIPIHFSGESPLLKEKGHKLTAPFTHLTVEALPDDLPPEIHIELSQFDSPEKDLYI
KDIVLPGNARILNEPDLLVAKVSEIHLKVETPVTASLPEEPEEKPAAAAEEKETAEKE
>Mature_217_residues
TGISLALNPRQVFGNKNKFLRAQGITPVHIFGHGLKSLALQANTQELESTISRAGSSHLVSLKLDTDKKTRKAFIREIQR
HPVKGYLQHVDFYQINLKEKVTAEIPIHFSGESPLLKEKGHKLTAPFTHLTVEALPDDLPPEIHIELSQFDSPEKDLYIK
DIVLPGNARILNEPDLLVAKVSEIHLKVETPVTASLPEEPEEKPAAAAEEKETAEKE

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_DEHE1 (Q3Z6J2)

Other databases:

- EMBL:   CP000027
- RefSeq:   YP_182157.1
- ProteinModelPortal:   Q3Z6J2
- SMR:   Q3Z6J2
- STRING:   Q3Z6J2
- GeneID:   3230573
- GenomeReviews:   CP000027_GR
- KEGG:   det:DET1454
- NMPDR:   fig|243164.3.peg.1469
- TIGR:   DET1454
- eggNOG:   COG1825
- HOGENOM:   HBG072679
- OMA:   IARELTI
- ProtClustDB:   PRK05618
- BioCyc:   DETH243164:DET_1454-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 24282; Mature: 24151

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGISLALNPRQVFGNKNKFLRAQGITPVHIFGHGLKSLALQANTQELESTISRAGSSHL
CCCCEEEECHHHHHCCCCCEEEECCCCEEEEECCCHHHHHCCCCHHHHHHHHHHCCCCEE
VSLKLDTDKKTRKAFIREIQRHPVKGYLQHVDFYQINLKEKVTAEIPIHFSGESPLLKEK
EEEEECCCHHHHHHHHHHHHHCCHHHHHHHCCEEEEEECCCEEEEEEEEECCCCCHHHHC
GHKLTAPFTHLTVEALPDDLPPEIHIELSQFDSPEKDLYIKDIVLPGNARILNEPDLLVA
CCEEECCHHEEEEEECCCCCCCCEEEEHHHCCCCCCCEEEEEEEECCCCEEECCCCEEEE
KVSEIHLKVETPVTASLPEEPEEKPAAAAEEKETAEKE
EEEEEEEEEECCEECCCCCCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure 
TGISLALNPRQVFGNKNKFLRAQGITPVHIFGHGLKSLALQANTQELESTISRAGSSHL
CCCEEEECHHHHHCCCCCEEEECCCCEEEEECCCHHHHHCCCCHHHHHHHHHHCCCCEE
VSLKLDTDKKTRKAFIREIQRHPVKGYLQHVDFYQINLKEKVTAEIPIHFSGESPLLKEK
EEEEECCCHHHHHHHHHHHHHCCHHHHHHHCCEEEEEECCCEEEEEEEEECCCCCHHHHC
GHKLTAPFTHLTVEALPDDLPPEIHIELSQFDSPEKDLYIKDIVLPGNARILNEPDLLVA
CCEEECCHHEEEEEECCCCCCCCEEEEHHHCCCCCCCEEEEEEEECCCCEEECCCCEEEE
KVSEIHLKVETPVTASLPEEPEEKPAAAAEEKETAEKE
EEEEEEEEEECCEECCCCCCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA