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The map label for this gene is nodJ [H]

Identifier: 57234809

GI number: 57234809

Start: 388601

End: 389368

Strand: Direct

Name: nodJ [H]

Synonym: DET0411

Alternate gene names: 57234809

Gene position: 388601-389368 (Clockwise)

Preceding gene: 57234810

Following gene: 57234808

Centisome position: 26.44

GC content: 49.22

Gene sequence:

>768_bases
ATGAACTGGCCTACCTACCGCGCCTTTTATATGTGGCTTCGGAACTACGATGTTTTTATCCGTTTGTTCTGGTCTATAGC
TCCGGGGTTTATTATTGAGCCGGTAGTGCTGCTGGTGGCTTTGGGGTTTGGCTTCGGGTCATTTATAGGGGATATAAACG
GCCAGCCGTATATGGAGTTTATAATACCGGGTGTTATTGCCAGCTACGCCATGACCAGCGCTACCTTTGAATGTACCTAT
AACGTCTTTTTCCGTATGGACTTCCGAAAAACCTATGACTCCATACTGGCTACCCCTATGAATATAAGTGACGTGGTAAC
CGGGGAGGTTTTATGGGGAGCTACCCGCTCCATCATAACAGCCTGCATTATCCTGCTGGTGGCGGCCCTGTTCGGTGTCA
TCCATTCGCCGCTGGCTCTGCTGGCGCCTGTTTTTGCGGTGCTGGAAGGTATCATGTTTGCCAGTATGGGTGTTTTCTTT
GCTTCTATAGTCCCCTCTGTTTACAGTTTTAATTATTATTTTACCCTGTTTATCGGCCCGATGACTTTTTTCAGCGGGGC
TTTTTTCCCGGTCTCCAGCTTTCCGGAGACGGTTCAGGTTATTTCAAATATTGTGCCTCTTACCCCGGCGGTCAGCCTTA
TACGGGGGGCGGTCAGTGGTGACTTTGCGGGGGTAAATGTGGTAATCTCGTTGCTGGCGGTTATCGGGGTGTCAGCCGCC
TTTTATATAGCTACCCTGTTCAGCATGAAACGCCGGGTTATGGAATAA

Upstream 100 bases:

>100_bases
GCCTGCTTGATGAACTTAAGGCCCTTGGCTGGAATGTATGGCAGCGGATAGGCACACTGGAAGACGTATTTTTGCGTCTG
ACCGGGAAGGGGCTGGTGGA

Downstream 100 bases:

>100_bases
CCCTTTAGGTAGTCTGGAGTTTTTGGATAATATACAAAGGAGCGGTAGATGAAGGTAATTGCCCTGGTGGGCATGCCGGG
GGCGGGTAAGACCGAGGCCT

Product: putative NodJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MNWPTYRAFYMWLRNYDVFIRLFWSIAPGFIIEPVVLLVALGFGFGSFIGDINGQPYMEFIIPGVIASYAMTSATFECTY
NVFFRMDFRKTYDSILATPMNISDVVTGEVLWGATRSIITACIILLVAALFGVIHSPLALLAPVFAVLEGIMFASMGVFF
ASIVPSVYSFNYYFTLFIGPMTFFSGAFFPVSSFPETVQVISNIVPLTPAVSLIRGAVSGDFAGVNVVISLLAVIGVSAA
FYIATLFSMKRRVME

Sequences:

>Translated_255_residues
MNWPTYRAFYMWLRNYDVFIRLFWSIAPGFIIEPVVLLVALGFGFGSFIGDINGQPYMEFIIPGVIASYAMTSATFECTY
NVFFRMDFRKTYDSILATPMNISDVVTGEVLWGATRSIITACIILLVAALFGVIHSPLALLAPVFAVLEGIMFASMGVFF
ASIVPSVYSFNYYFTLFIGPMTFFSGAFFPVSSFPETVQVISNIVPLTPAVSLIRGAVSGDFAGVNVVISLLAVIGVSAA
FYIATLFSMKRRVME
>Mature_255_residues
MNWPTYRAFYMWLRNYDVFIRLFWSIAPGFIIEPVVLLVALGFGFGSFIGDINGQPYMEFIIPGVIASYAMTSATFECTY
NVFFRMDFRKTYDSILATPMNISDVVTGEVLWGATRSIITACIILLVAALFGVIHSPLALLAPVFAVLEGIMFASMGVFF
ASIVPSVYSFNYYFTLFIGPMTFFSGAFFPVSSFPETVQVISNIVPLTPAVSLIRGAVSGDFAGVNVVISLLAVIGVSAA
FYIATLFSMKRRVME

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=238, Percent_Identity=25.2100840336134, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28096; Mature: 28096

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWPTYRAFYMWLRNYDVFIRLFWSIAPGFIIEPVVLLVALGFGFGSFIGDINGQPYMEF
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IIPGVIASYAMTSATFECTYNVFFRMDFRKTYDSILATPMNISDVVTGEVLWGATRSIIT
HHHHHHHHHHHHHHHHEEEEEEHEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ACIILLVAALFGVIHSPLALLAPVFAVLEGIMFASMGVFFASIVPSVYSFNYYFTLFIGP
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTFFSGAFFPVSSFPETVQVISNIVPLTPAVSLIRGAVSGDFAGVNVVISLLAVIGVSAA
HHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FYIATLFSMKRRVME
HHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]