| Definition | Dehalococcoides ethenogenes 195, complete genome. |
|---|---|
| Accession | NC_002936 |
| Length | 1,469,720 |
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The map label for this gene is uvrA [H]
Identifier: 57234659
GI number: 57234659
Start: 499589
End: 502429
Strand: Direct
Name: uvrA [H]
Synonym: DET0546
Alternate gene names: 57234659
Gene position: 499589-502429 (Clockwise)
Preceding gene: 57234677
Following gene: 57234658
Centisome position: 33.99
GC content: 51.74
Gene sequence:
>2841_bases GTGGCTCAGGAATATATAAAGATAAAAGGTGCCCGCGAACACAACCTCAAAAATATAGATGTCCAGATTCCCCGTGACAA GCTGGTGGTTGTGACCGGGCTTTCGGGGTCAGGCAAGAGTTCACTGGCTTTTGATACCGTTTATGCCGAAGGGCAGCGCC GTTATATGGAGTCTCTTTCATCATACGCCCGCCAGTTTCTGGGCAGGATGGAAAAACCGGACGTAGACCATATAGAGGGG CTTTCACCGGCTATAGCCATTGACCAGAAGGGCGTCAGCCACAACCCCCGTTCCACCGTGGGGACAGTGACTGAAATATA TGATTATTTGCGTTTGCTGTTTGCCCGCACTGGTCACCCTCACTGCCCTGAGTGCGGCAAGGAGATTTCCGCCCAGAGCG TGGAACAGATAACAGATGCCGTTCAAACTCTTGCGGAGGGTACAAAAATACTTATTCTGGGGCCGCTGGTGCGGGGGCGC AAGGGCGAGTATGCCCAGATGTTTAAAGACCTGCGTAAGTCAGGTTATGCCAGAGTGAGGGTAGACGGGCAGATTAGGGA TTTGTCCGAAGAAATAGAGCTGGATAAAAATAAAAAACATGATATAGAAGCCGTAGTAGACCGGCTGGTGGTCGGTCAGG CAGGTGTGCAGGGGCGGATTGCAGATTCGGTTGAAACTGCCCTGAAACTGGGCGGCGGGTTGGTAATAATATCCGTGGTA GACGGGCAGGACATGCTCTTTTCAGAGAAATTTTCCTGTGCGGACTGCGGGGTGAGTCTGGGGGAGATAGAACCCCGGAC TTTCAGCTTTAATACCCCCCACGGTGCCTGTCCCACCTGTATGGGGCTTGGTGCCAAGATGGAGCTTGACCCTGATTTGA TTATACCGGACAAAAGTTTGTCTCTGGCTGACGGGGCGATCAGCCCATATCAAACCCAAAACTGGTATTTCGGGCAGCTT GAAGATTTAGCCCGCCGGGCGGGTTTTTCGGTTAATAAACCTGTCTCTACTTTTACGCCAGCCCAGATGCAGGTGCTGCT TTATGGTGAGGGCGGTGATATCCATAAATACCGCAACCGTTACGGGCGGGTACGGGAATATACCAGCGGCTTTGAGGGAG TAATCCCCCGCCTGGACAGACTTTACCGTGACAGCGAATCTCAGGGGGTAAGGGAAAGCATTGAAAAATACATGCTGGCC AGCCCGTGTCAGGCCTGCGGCGGTAAAAGGCTTCGCAAGGAAGCCTTGTCAGTAAAAATAGGCGAGCTTAATATTGCTGA TGTTGCGGCCATGTCTGTAGATGAGCAGCTTAAATGGGCAAATGAACTGGCTGGCAAACATACCATATTTAACAAACGCG AACAGCTTATTGCCGCCCAGATACTCAAGGAGATACGTTCACGTTTGGGCTTTTTAAACAATGTGGGTTTGGAATACCTG ACTATAGACCGTATTGCCGGGACGCTTTCCGGCGGTGAAGCCCAGCGGATACGCCTGGCATCCCAGATAGGCTCAGGGCT GATGGGGGTGCTTTACGTTTGTGATGAACCTACTATAGGCTTGCACCCCGCAGATGATACCCGTTTGGTGGAAACCCTGC AAAAGCTGCGTGATTTGGGCAATACCATACTGGTGGTGGAGCATGATGAATCCGTGATGCGGGCAGCGGACTATATTATA GATATGGGGCCGGGGGCAGGTGAACATGGCGGTCGGGTAGTGGCTACCGGTAATATCACTGAAATAATGCAAAATCCGGC TTCGCTAACCGGGCAGTATTTATCCGGTGCCAGAGTAATACCCGTACCCGAAAAGCGGCGTAATGGTAACGGGCAGGAAA TAATAATACAGGGTGCCAGACAGAATAACCTTAAAAATATAGACGTACATATTCCGCTGGGCAAGCTGGTCTGTGTCAGC GGCGTATCCGGCAGCGGCAAATCCACACTGGTTACCGATATACTTTTTAAACATCTGGCCCAGGTGTTTTACGGGGCAAA AGACCGGGCGGGTGGCTCAGACGCTATAACCGGTACTGAACATATTGATAAAATAATAGAGATAAATCAGTCACCCATCG GGCGGACACCCCGTTCAAATCCGGCCACCTATACCGGGGCATTCACCCATATAAGGGAACTGTTTGCCTCTGTACCTGAA GCCAAAGTAAAAGGCTACGGGCCGGGGCGGTTTTCATTTAATATAAAAGGCGGCCGCTGTGAGACCTGCGGCGGTGAGGG TTCTATCCAGATAGAAATGCAGTTCCTGCCGGATGTGACCGTACCTTGTGAGGTCTGTCACGGGGCGCGTTATAACCGCG AAGTGCTGGAGATAAAATTTAAAGACAAGACCATTGCTGATGTGCTGGATATGACGGTAGACAGGGCACTGGAATTTTTT GAAAATTTCCCCAAAATCAGCTCCAAGCTCCAAACATTGCAGGACGTGGGTTTGGGATATATCCGCATCGGCCAGCCGGC ACCCACCTTATCCGGGGGCGAGGCCCAGCGCATCAAACTGGCAACCGAGCTTTCCAAGCGGGCTACCGGGCGGACTTTAT ACATACTGGACGAACCCACCACCGGGCTTTCTTTTGAAGATGTGGCGGCGCTCTTACGGGTGCTTCAGCGGCTAGTGGAC AGCGGCAATACGGTGGTTGTGATTGAACACCAGCTGGACGTTATTAAAAATGCAGACTGGATTATAGACCTGGGGCCGGG TGCGGGCGTAAAAGGCGGGCAGATTGTGGCTGAGGGCGTGCCTGAAGATGTAGCCTTAAATAAAGCTTCGCTTACCGGCA AATACTTGCGGCGGGTTTTGCCGAAACTTAAACCGGCTTAA
Upstream 100 bases:
>100_bases TAGGGGTTTGGTCTTGGCTTGTTAAGCATTATGGTGTAAAATATTAGAACACATGTTTTGATTTGTCCGGACTAATATAA ATGAACAGGAGACCAAGCCT
Downstream 100 bases:
>100_bases TAAATTACGGTCTGCTGTCAGGCGCAGTGGCAAATTTGTGAAGACTAATCAGCGGAGAGATAAATATGGACAGGCAGCTT GCTTTAGCTGAAGTAGAAAA
Product: excinuclease ABC, A subunit
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 946; Mature: 945
Protein sequence:
>946_residues MAQEYIKIKGAREHNLKNIDVQIPRDKLVVVTGLSGSGKSSLAFDTVYAEGQRRYMESLSSYARQFLGRMEKPDVDHIEG LSPAIAIDQKGVSHNPRSTVGTVTEIYDYLRLLFARTGHPHCPECGKEISAQSVEQITDAVQTLAEGTKILILGPLVRGR KGEYAQMFKDLRKSGYARVRVDGQIRDLSEEIELDKNKKHDIEAVVDRLVVGQAGVQGRIADSVETALKLGGGLVIISVV DGQDMLFSEKFSCADCGVSLGEIEPRTFSFNTPHGACPTCMGLGAKMELDPDLIIPDKSLSLADGAISPYQTQNWYFGQL EDLARRAGFSVNKPVSTFTPAQMQVLLYGEGGDIHKYRNRYGRVREYTSGFEGVIPRLDRLYRDSESQGVRESIEKYMLA SPCQACGGKRLRKEALSVKIGELNIADVAAMSVDEQLKWANELAGKHTIFNKREQLIAAQILKEIRSRLGFLNNVGLEYL TIDRIAGTLSGGEAQRIRLASQIGSGLMGVLYVCDEPTIGLHPADDTRLVETLQKLRDLGNTILVVEHDESVMRAADYII DMGPGAGEHGGRVVATGNITEIMQNPASLTGQYLSGARVIPVPEKRRNGNGQEIIIQGARQNNLKNIDVHIPLGKLVCVS GVSGSGKSTLVTDILFKHLAQVFYGAKDRAGGSDAITGTEHIDKIIEINQSPIGRTPRSNPATYTGAFTHIRELFASVPE AKVKGYGPGRFSFNIKGGRCETCGGEGSIQIEMQFLPDVTVPCEVCHGARYNREVLEIKFKDKTIADVLDMTVDRALEFF ENFPKISSKLQTLQDVGLGYIRIGQPAPTLSGGEAQRIKLATELSKRATGRTLYILDEPTTGLSFEDVAALLRVLQRLVD SGNTVVVIEHQLDVIKNADWIIDLGPGAGVKGGQIVAEGVPEDVALNKASLTGKYLRRVLPKLKPA
Sequences:
>Translated_946_residues MAQEYIKIKGAREHNLKNIDVQIPRDKLVVVTGLSGSGKSSLAFDTVYAEGQRRYMESLSSYARQFLGRMEKPDVDHIEG LSPAIAIDQKGVSHNPRSTVGTVTEIYDYLRLLFARTGHPHCPECGKEISAQSVEQITDAVQTLAEGTKILILGPLVRGR KGEYAQMFKDLRKSGYARVRVDGQIRDLSEEIELDKNKKHDIEAVVDRLVVGQAGVQGRIADSVETALKLGGGLVIISVV DGQDMLFSEKFSCADCGVSLGEIEPRTFSFNTPHGACPTCMGLGAKMELDPDLIIPDKSLSLADGAISPYQTQNWYFGQL EDLARRAGFSVNKPVSTFTPAQMQVLLYGEGGDIHKYRNRYGRVREYTSGFEGVIPRLDRLYRDSESQGVRESIEKYMLA SPCQACGGKRLRKEALSVKIGELNIADVAAMSVDEQLKWANELAGKHTIFNKREQLIAAQILKEIRSRLGFLNNVGLEYL TIDRIAGTLSGGEAQRIRLASQIGSGLMGVLYVCDEPTIGLHPADDTRLVETLQKLRDLGNTILVVEHDESVMRAADYII DMGPGAGEHGGRVVATGNITEIMQNPASLTGQYLSGARVIPVPEKRRNGNGQEIIIQGARQNNLKNIDVHIPLGKLVCVS GVSGSGKSTLVTDILFKHLAQVFYGAKDRAGGSDAITGTEHIDKIIEINQSPIGRTPRSNPATYTGAFTHIRELFASVPE AKVKGYGPGRFSFNIKGGRCETCGGEGSIQIEMQFLPDVTVPCEVCHGARYNREVLEIKFKDKTIADVLDMTVDRALEFF ENFPKISSKLQTLQDVGLGYIRIGQPAPTLSGGEAQRIKLATELSKRATGRTLYILDEPTTGLSFEDVAALLRVLQRLVD SGNTVVVIEHQLDVIKNADWIIDLGPGAGVKGGQIVAEGVPEDVALNKASLTGKYLRRVLPKLKPA >Mature_945_residues AQEYIKIKGAREHNLKNIDVQIPRDKLVVVTGLSGSGKSSLAFDTVYAEGQRRYMESLSSYARQFLGRMEKPDVDHIEGL SPAIAIDQKGVSHNPRSTVGTVTEIYDYLRLLFARTGHPHCPECGKEISAQSVEQITDAVQTLAEGTKILILGPLVRGRK GEYAQMFKDLRKSGYARVRVDGQIRDLSEEIELDKNKKHDIEAVVDRLVVGQAGVQGRIADSVETALKLGGGLVIISVVD GQDMLFSEKFSCADCGVSLGEIEPRTFSFNTPHGACPTCMGLGAKMELDPDLIIPDKSLSLADGAISPYQTQNWYFGQLE DLARRAGFSVNKPVSTFTPAQMQVLLYGEGGDIHKYRNRYGRVREYTSGFEGVIPRLDRLYRDSESQGVRESIEKYMLAS PCQACGGKRLRKEALSVKIGELNIADVAAMSVDEQLKWANELAGKHTIFNKREQLIAAQILKEIRSRLGFLNNVGLEYLT IDRIAGTLSGGEAQRIRLASQIGSGLMGVLYVCDEPTIGLHPADDTRLVETLQKLRDLGNTILVVEHDESVMRAADYIID MGPGAGEHGGRVVATGNITEIMQNPASLTGQYLSGARVIPVPEKRRNGNGQEIIIQGARQNNLKNIDVHIPLGKLVCVSG VSGSGKSTLVTDILFKHLAQVFYGAKDRAGGSDAITGTEHIDKIIEINQSPIGRTPRSNPATYTGAFTHIRELFASVPEA KVKGYGPGRFSFNIKGGRCETCGGEGSIQIEMQFLPDVTVPCEVCHGARYNREVLEIKFKDKTIADVLDMTVDRALEFFE NFPKISSKLQTLQDVGLGYIRIGQPAPTLSGGEAQRIKLATELSKRATGRTLYILDEPTTGLSFEDVAALLRVLQRLVDS GNTVVVIEHQLDVIKNADWIIDLGPGAGVKGGQIVAEGVPEDVALNKASLTGKYLRRVLPKLKPA
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=944, Percent_Identity=56.3559322033898, Blast_Score=1042, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 103226; Mature: 103094
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQEYIKIKGAREHNLKNIDVQIPRDKLVVVTGLSGSGKSSLAFDTVYAEGQRRYMESLS CCCCEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHH SYARQFLGRMEKPDVDHIEGLSPAIAIDQKGVSHNPRSTVGTVTEIYDYLRLLFARTGHP HHHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC HCPECGKEISAQSVEQITDAVQTLAEGTKILILGPLVRGRKGEYAQMFKDLRKSGYARVR CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEE VDGQIRDLSEEIELDKNKKHDIEAVVDRLVVGQAGVQGRIADSVETALKLGGGLVIISVV ECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEE DGQDMLFSEKFSCADCGVSLGEIEPRTFSFNTPHGACPTCMGLGAKMELDPDLIIPDKSL CCCCHHHHCCCCHHHCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCEECCCCEECCCCCC SLADGAISPYQTQNWYFGQLEDLARRAGFSVNKPVSTFTPAQMQVLLYGEGGDIHKYRNR CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHH YGRVREYTSGFEGVIPRLDRLYRDSESQGVRESIEKYMLASPCQACGGKRLRKEALSVKI HHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHCHHHHHHHHHEEEE GELNIADVAAMSVDEQLKWANELAGKHTIFNKREQLIAAQILKEIRSRLGFLNNVGLEYL CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCEE TIDRIAGTLSGGEAQRIRLASQIGSGLMGVLYVCDEPTIGLHPADDTRLVETLQKLRDLG EHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC NTILVVEHDESVMRAADYIIDMGPGAGEHGGRVVATGNITEIMQNPASLTGQYLSGARVI CEEEEEECCHHHHHHHHHHEECCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCEEE PVPEKRRNGNGQEIIIQGARQNNLKNIDVHIPLGKLVCVSGVSGSGKSTLVTDILFKHLA CCCHHHCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHH QVFYGAKDRAGGSDAITGTEHIDKIIEINQSPIGRTPRSNPATYTGAFTHIRELFASVPE HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC AKVKGYGPGRFSFNIKGGRCETCGGEGSIQIEMQFLPDVTVPCEVCHGARYNREVLEIKF CCCCCCCCCEEEEEECCCEEECCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCEEEEEEE KDKTIADVLDMTVDRALEFFENFPKISSKLQTLQDVGLGYIRIGQPAPTLSGGEAQRIKL CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH ATELSKRATGRTLYILDEPTTGLSFEDVAALLRVLQRLVDSGNTVVVIEHQLDVIKNADW HHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCE IIDLGPGAGVKGGQIVAEGVPEDVALNKASLTGKYLRRVLPKLKPA EEECCCCCCCCCCEEEECCCCCHHHCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AQEYIKIKGAREHNLKNIDVQIPRDKLVVVTGLSGSGKSSLAFDTVYAEGQRRYMESLS CCCEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHH SYARQFLGRMEKPDVDHIEGLSPAIAIDQKGVSHNPRSTVGTVTEIYDYLRLLFARTGHP HHHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC HCPECGKEISAQSVEQITDAVQTLAEGTKILILGPLVRGRKGEYAQMFKDLRKSGYARVR CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEE VDGQIRDLSEEIELDKNKKHDIEAVVDRLVVGQAGVQGRIADSVETALKLGGGLVIISVV ECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEE DGQDMLFSEKFSCADCGVSLGEIEPRTFSFNTPHGACPTCMGLGAKMELDPDLIIPDKSL CCCCHHHHCCCCHHHCCCCCCCCCCCEEECCCCCCCCCHHHCCCCCEECCCCEECCCCCC SLADGAISPYQTQNWYFGQLEDLARRAGFSVNKPVSTFTPAQMQVLLYGEGGDIHKYRNR CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHH YGRVREYTSGFEGVIPRLDRLYRDSESQGVRESIEKYMLASPCQACGGKRLRKEALSVKI HHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHCHHHHHHHHHEEEE GELNIADVAAMSVDEQLKWANELAGKHTIFNKREQLIAAQILKEIRSRLGFLNNVGLEYL CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCEE TIDRIAGTLSGGEAQRIRLASQIGSGLMGVLYVCDEPTIGLHPADDTRLVETLQKLRDLG EHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC NTILVVEHDESVMRAADYIIDMGPGAGEHGGRVVATGNITEIMQNPASLTGQYLSGARVI CEEEEEECCHHHHHHHHHHEECCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCEEE PVPEKRRNGNGQEIIIQGARQNNLKNIDVHIPLGKLVCVSGVSGSGKSTLVTDILFKHLA CCCHHHCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHH QVFYGAKDRAGGSDAITGTEHIDKIIEINQSPIGRTPRSNPATYTGAFTHIRELFASVPE HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC AKVKGYGPGRFSFNIKGGRCETCGGEGSIQIEMQFLPDVTVPCEVCHGARYNREVLEIKF CCCCCCCCCEEEEEECCCEEECCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCEEEEEEE KDKTIADVLDMTVDRALEFFENFPKISSKLQTLQDVGLGYIRIGQPAPTLSGGEAQRIKL CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH ATELSKRATGRTLYILDEPTTGLSFEDVAALLRVLQRLVDSGNTVVVIEHQLDVIKNADW HHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCE IIDLGPGAGVKGGQIVAEGVPEDVALNKASLTGKYLRRVLPKLKPA EEECCCCCCCCCCEEEECCCCCHHHCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11792842 [H]