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The map label for this gene is radC [C]

Identifier: 57234651

GI number: 57234651

Start: 524903

End: 525571

Strand: Direct

Name: radC [C]

Synonym: DET0572

Alternate gene names: 57234651

Gene position: 524903-525571 (Clockwise)

Preceding gene: 57234652

Following gene: 57234650

Centisome position: 35.71

GC content: 52.77

Gene sequence:

>669_bases
ATGCGTGATTTGCCGCTGGCCGAAAGACCCAGAGAAAGGCTTCAGTCTTTGGGGGCAGGGGTGCTTTCCTCAGCCGAACT
TCTGGCGGTTATTTTGGGGCGGGGAGTAGCGGGTGAACCGGTTTTACAGAGCGCTCAGCGCCTGCTTACCCACTTCGGCG
GTCCGTCAGGCATAGCCTCGGCCAGCGTGGAGGAACTTTTAAAACTGAAAGGCATAGGTCTGGCCAAAGCCTGCCAGCTG
AAGGCTGCTTTTGAACTGGCTAAACGGGCAGGCGGGATTAAAGCCGAATACCAGCCCTGCATCAAAACCCCGGAAGACGT
TTTTCAAATAATATACCCGCTGGTCTGTGACGAAAAAAAGGAACATTTTTTCTGCCTGATGCTGGATGTCAAAAGTAAGC
TTATCCGGGTAGGGCATATATCTGCCGGCAGCCTGGATGAGAGTGTGGTGCATCCGCGCGAAGTCTTTAAAGAAGCACTT
TCCGCCAGTGCCGCAACCGTAATACTGGCACACAACCATCCCTCCGGGGAAAGTGAACCCTCGCCGGATGATATCGGCCT
GTCCGCCCGCCTAAGAGAGGCCGGGGGTATAATGGGGATAGAAGTGCTTGACCATGTAATAATAGGCGGACAAACTTTTA
CCAGTTTAAAAAGACAGGGGCTTTTATAA

Upstream 100 bases:

>100_bases
CTGACACCCGGGTTAGTAGTCCTTTTTACCATAGTAGGCGGGGGCAGTATTATAACCGCTTTCTGGTTATGGAGTAGCAG
AGTTGCTTCCCGCACCTAGA

Downstream 100 bases:

>100_bases
TTATGAAAAAAATACTGTTTGCCATTTTTTCGGTCTGCCTCAGCTTTAGTTTAGTGCTGAGCGGCTGCGGTTATGCACCG
GATGATTCCACTATGCCTGC

Product: RadC family DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MRDLPLAERPRERLQSLGAGVLSSAELLAVILGRGVAGEPVLQSAQRLLTHFGGPSGIASASVEELLKLKGIGLAKACQL
KAAFELAKRAGGIKAEYQPCIKTPEDVFQIIYPLVCDEKKEHFFCLMLDVKSKLIRVGHISAGSLDESVVHPREVFKEAL
SASAATVILAHNHPSGESEPSPDDIGLSARLREAGGIMGIEVLDHVIIGGQTFTSLKRQGLL

Sequences:

>Translated_222_residues
MRDLPLAERPRERLQSLGAGVLSSAELLAVILGRGVAGEPVLQSAQRLLTHFGGPSGIASASVEELLKLKGIGLAKACQL
KAAFELAKRAGGIKAEYQPCIKTPEDVFQIIYPLVCDEKKEHFFCLMLDVKSKLIRVGHISAGSLDESVVHPREVFKEAL
SASAATVILAHNHPSGESEPSPDDIGLSARLREAGGIMGIEVLDHVIIGGQTFTSLKRQGLL
>Mature_222_residues
MRDLPLAERPRERLQSLGAGVLSSAELLAVILGRGVAGEPVLQSAQRLLTHFGGPSGIASASVEELLKLKGIGLAKACQL
KAAFELAKRAGGIKAEYQPCIKTPEDVFQIIYPLVCDEKKEHFFCLMLDVKSKLIRVGHISAGSLDESVVHPREVFKEAL
SASAATVILAHNHPSGESEPSPDDIGLSARLREAGGIMGIEVLDHVIIGGQTFTSLKRQGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=34.2723004694836, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1788997, Length=104, Percent_Identity=45.1923076923077, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI2367100, Length=104, Percent_Identity=45.1923076923077, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788312, Length=104, Percent_Identity=44.2307692307692, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 23676; Mature: 23676

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS01302 RADC ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLPLAERPRERLQSLGAGVLSSAELLAVILGRGVAGEPVLQSAQRLLTHFGGPSGIAS
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHH
ASVEELLKLKGIGLAKACQLKAAFELAKRAGGIKAEYQPCIKTPEDVFQIIYPLVCDEKK
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHCCCCC
EHFFCLMLDVKSKLIRVGHISAGSLDESVVHPREVFKEALSASAATVILAHNHPSGESEP
CCEEEEEEHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHCCCCEEEEEEECCCCCCCCC
SPDDIGLSARLREAGGIMGIEVLDHVIIGGQTFTSLKRQGLL
CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MRDLPLAERPRERLQSLGAGVLSSAELLAVILGRGVAGEPVLQSAQRLLTHFGGPSGIAS
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHH
ASVEELLKLKGIGLAKACQLKAAFELAKRAGGIKAEYQPCIKTPEDVFQIIYPLVCDEKK
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHCCCCC
EHFFCLMLDVKSKLIRVGHISAGSLDESVVHPREVFKEALSASAATVILAHNHPSGESEP
CCEEEEEEHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHCCCCEEEEEEECCCCCCCCC
SPDDIGLSARLREAGGIMGIEVLDHVIIGGQTFTSLKRQGLL
CCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA