Click here to switch to the map view.

The map label for this gene is 57234379

Identifier: 57234379

GI number: 57234379

Start: 779169

End: 779720

Strand: Direct

Name: 57234379

Synonym: DET0850

Alternate gene names: NA

Gene position: 779169-779720 (Clockwise)

Preceding gene: 57234389

Following gene: 57234378

Centisome position: 53.01

GC content: 48.37

Gene sequence:

>552_bases
ATGCCTGCCAGCCCGCTGGAAGAATATAACCGCAAACGTGATTTTAATAAAACCGCCGAACCGTCAGGGACAAAAAGCCC
GCCATCCGCTAACCCCGTGTTTGTTGTGCAAAAACATCTTGCCAGCCATTTGCATTATGATTTCAGGCTGGAAATTGACG
GTGTATTAAAGTCATGGGCTGTGCCCAAAGGACCGTCTGCCAGTCCCAAAGAAAAAAGGCTGGCGGTTGCCACCGAAGAC
CACCCCATGCAGTATGCCTCTTTTGAAGGGGTAATACCGGCCGGGGAATATGGTGCCGGTAAAGTTATAGTCTGGGACAG
GGGCACTTTTCAGAACCTGAAAGACGGCAAAACACTGGAGGAATCTTACAGCACAGGGCATCTAGTTATAAACCTTCAAG
GTGAAAAACTTAAAGGCGGTTATTCGCTTTTGCGGACTAAAATGGGCTGGCTGATGGTCAAGATGGAAGACGAGTTTGCC
CGCCCTTTGTCAGATATACTTAACGAACAGCCTGCTTCAGTAATAAGCGGCAGGCTGGTAGAAGAAATTTAG

Upstream 100 bases:

>100_bases
GTTCATCCATATGCTTCTCCATCTCCCCTAAAGTGTCTGGACTTTAGGCCGGAACCGTTATATTATACAACAATAAGCAC
GTCTGAGGAGTAAACTTGTT

Downstream 100 bases:

>100_bases
TTTAGCCGGGTTTAAACCATACCGGGGAGTAGTCTATGAGTGTAATAGAGACACATGGCATAACCAAAATATACGGCCGC
AATGTTATAGTGAATGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MPASPLEEYNRKRDFNKTAEPSGTKSPPSANPVFVVQKHLASHLHYDFRLEIDGVLKSWAVPKGPSASPKEKRLAVATED
HPMQYASFEGVIPAGEYGAGKVIVWDRGTFQNLKDGKTLEESYSTGHLVINLQGEKLKGGYSLLRTKMGWLMVKMEDEFA
RPLSDILNEQPASVISGRLVEEI

Sequences:

>Translated_183_residues
MPASPLEEYNRKRDFNKTAEPSGTKSPPSANPVFVVQKHLASHLHYDFRLEIDGVLKSWAVPKGPSASPKEKRLAVATED
HPMQYASFEGVIPAGEYGAGKVIVWDRGTFQNLKDGKTLEESYSTGHLVINLQGEKLKGGYSLLRTKMGWLMVKMEDEFA
RPLSDILNEQPASVISGRLVEEI
>Mature_182_residues
PASPLEEYNRKRDFNKTAEPSGTKSPPSANPVFVVQKHLASHLHYDFRLEIDGVLKSWAVPKGPSASPKEKRLAVATEDH
PMQYASFEGVIPAGEYGAGKVIVWDRGTFQNLKDGKTLEESYSTGHLVINLQGEKLKGGYSLLRTKMGWLMVKMEDEFAR
PLSDILNEQPASVISGRLVEEI

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 20325; Mature: 20194

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASPLEEYNRKRDFNKTAEPSGTKSPPSANPVFVVQKHLASHLHYDFRLEIDGVLKSWA
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHCC
VPKGPSASPKEKRLAVATEDHPMQYASFEGVIPAGEYGAGKVIVWDRGTFQNLKDGKTLE
CCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHH
ESYSTGHLVINLQGEKLKGGYSLLRTKMGWLMVKMEDEFARPLSDILNEQPASVISGRLV
HCCCCCEEEEEECCCCCCCHHHHHHHHHCEEEEEECHHHHHHHHHHHCCCCHHHHHHHHH
EEI
HCC
>Mature Secondary Structure 
PASPLEEYNRKRDFNKTAEPSGTKSPPSANPVFVVQKHLASHLHYDFRLEIDGVLKSWA
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHCC
VPKGPSASPKEKRLAVATEDHPMQYASFEGVIPAGEYGAGKVIVWDRGTFQNLKDGKTLE
CCCCCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHH
ESYSTGHLVINLQGEKLKGGYSLLRTKMGWLMVKMEDEFARPLSDILNEQPASVISGRLV
HCCCCCEEEEEECCCCCCCHHHHHHHHHCEEEEEECHHHHHHHHHHHCCCCHHHHHHHHH
EEI
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]