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The map label for this gene is yabD [H]

Identifier: 57234288

GI number: 57234288

Start: 855484

End: 856278

Strand: Direct

Name: yabD [H]

Synonym: DET0934

Alternate gene names: 57234288

Gene position: 855484-856278 (Clockwise)

Preceding gene: 57234289

Following gene: 57234286

Centisome position: 58.21

GC content: 50.94

Gene sequence:

>795_bases
GTGCCGATTTATGAATATGTAGACACCCATTCCCATCTGGATATGCCTGAATTTGACGCTGACCGTCAGGAAATGCTAAA
GCGGGCTTTTGAAAACGGCGTAAAAACTATAATTACCACCGGTATAGACATACCTTCCAGCCAAAAAGCCATTGACCTGG
CAGCCGCCAATCCGGCCATATACGCCGCAGTCGGTATCCACCCCCAGGAATGCACTGGGGTTACCGAGGCGGATTTTGAA
CGTCTGGAACTACTGGTTAAGTGTGAAAAGGTGGTGGCTATAGGCGAATGCGGGCTGGATTATTACCGTGATTACTCACC
CCGCCACACCCAGCTGGAAACATTCTACCACCACCTTGATTTAGCTGACCAAACCGGTCTGCCGCTTATAATCCACTGCC
GCCAGGCCGAAGAAGACGTACTGAAAATACTTTCGGACTGGTCTGCCCAGAGCCCGGCGAGCGCAGGCAAAGGCGTAATC
CACTGTTTCAGCGGTTCGGCCGAAACCGCACTTAAATATATAAATATGGGTTTTTATATAGGGCTGGGCGCTTATATCGG
TTATCCGTCTTCCAGAAAATATCACCCTGCCTTTGCCGCCATACCTCTTGAGCATATAGTACTGGAAACTGACTGCCCGT
TTCTGCCCCCCCAAACTCACCGCGGGGAACGGAACGAACCCGCCTATATACCGCTGACAGCGGCAACTCTGGCGGAGATA
AAAAACCTTGGTACTAACGAAGTGGCATCGGCAACCACTGCCAATGCCCGCCGCCTATTTCACCTTGATAAATAA

Upstream 100 bases:

>100_bases
ATTTCGGGACTGGCTGTGTTAATATTCGGCATTGTACCTGAAACACTCTTAAACCTTATTGAAAAGGCCGCCGAGCTAAT
AATCCATTAGGACATTTGCC

Downstream 100 bases:

>100_bases
AAAAGCAGACGGGCAGATATCATTAAGCACACACTCCGGGCAACGCGGCTTTTTGGCATCACAGACTGCGCGCCCATGGT
CTATCAGGTAATACGAAAAA

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MPIYEYVDTHSHLDMPEFDADRQEMLKRAFENGVKTIITTGIDIPSSQKAIDLAAANPAIYAAVGIHPQECTGVTEADFE
RLELLVKCEKVVAIGECGLDYYRDYSPRHTQLETFYHHLDLADQTGLPLIIHCRQAEEDVLKILSDWSAQSPASAGKGVI
HCFSGSAETALKYINMGFYIGLGAYIGYPSSRKYHPAFAAIPLEHIVLETDCPFLPPQTHRGERNEPAYIPLTAATLAEI
KNLGTNEVASATTANARRLFHLDK

Sequences:

>Translated_264_residues
MPIYEYVDTHSHLDMPEFDADRQEMLKRAFENGVKTIITTGIDIPSSQKAIDLAAANPAIYAAVGIHPQECTGVTEADFE
RLELLVKCEKVVAIGECGLDYYRDYSPRHTQLETFYHHLDLADQTGLPLIIHCRQAEEDVLKILSDWSAQSPASAGKGVI
HCFSGSAETALKYINMGFYIGLGAYIGYPSSRKYHPAFAAIPLEHIVLETDCPFLPPQTHRGERNEPAYIPLTAATLAEI
KNLGTNEVASATTANARRLFHLDK
>Mature_263_residues
PIYEYVDTHSHLDMPEFDADRQEMLKRAFENGVKTIITTGIDIPSSQKAIDLAAANPAIYAAVGIHPQECTGVTEADFER
LELLVKCEKVVAIGECGLDYYRDYSPRHTQLETFYHHLDLADQTGLPLIIHCRQAEEDVLKILSDWSAQSPASAGKGVIH
CFSGSAETALKYINMGFYIGLGAYIGYPSSRKYHPAFAAIPLEHIVLETDCPFLPPQTHRGERNEPAYIPLTAATLAEIK
NLGTNEVASATTANARRLFHLDK

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=300, Percent_Identity=29.3333333333333, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI225903439, Length=253, Percent_Identity=29.6442687747036, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=26.9662921348315, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=26.9662921348315, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=26.4705882352941, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI225903424, Length=211, Percent_Identity=34.1232227488152, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=26.6409266409266, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=24.0343347639485, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=33.4615384615385, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI87082439, Length=262, Percent_Identity=32.0610687022901, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI48994985, Length=258, Percent_Identity=30.6201550387597, Blast_Score=136, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17559024, Length=290, Percent_Identity=32.7586206896552, Blast_Score=157, Evalue=5e-39,
Organism=Caenorhabditis elegans, GI71980746, Length=267, Percent_Identity=27.3408239700375, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=228, Percent_Identity=34.2105263157895, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17543026, Length=188, Percent_Identity=35.6382978723404, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=32.5174825174825, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI221330018, Length=248, Percent_Identity=31.0483870967742, Blast_Score=110, Evalue=9e-25,
Organism=Drosophila melanogaster, GI24586117, Length=218, Percent_Identity=32.5688073394495, Blast_Score=108, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 29219; Mature: 29088

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIYEYVDTHSHLDMPEFDADRQEMLKRAFENGVKTIITTGIDIPSSQKAIDLAAANPAI
CCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCEE
YAAVGIHPQECTGVTEADFERLELLVKCEKVVAIGECGLDYYRDYSPRHTQLETFYHHLD
EEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHEEHHCCHHHHHCCCCCHHHHHHHHHHHC
LADQTGLPLIIHCRQAEEDVLKILSDWSAQSPASAGKGVIHCFSGSAETALKYINMGFYI
CCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCHHE
GLGAYIGYPSSRKYHPAFAAIPLEHIVLETDCPFLPPQTHRGERNEPAYIPLTAATLAEI
EHHHHHCCCCCCCCCCHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHH
KNLGTNEVASATTANARRLFHLDK
HCCCCCHHHHHHCCCCCEEEEECC
>Mature Secondary Structure 
PIYEYVDTHSHLDMPEFDADRQEMLKRAFENGVKTIITTGIDIPSSQKAIDLAAANPAI
CCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCEE
YAAVGIHPQECTGVTEADFERLELLVKCEKVVAIGECGLDYYRDYSPRHTQLETFYHHLD
EEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHEEHHCCHHHHHCCCCCHHHHHHHHHHHC
LADQTGLPLIIHCRQAEEDVLKILSDWSAQSPASAGKGVIHCFSGSAETALKYINMGFYI
CCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCHHE
GLGAYIGYPSSRKYHPAFAAIPLEHIVLETDCPFLPPQTHRGERNEPAYIPLTAATLAEI
EHHHHHCCCCCCCCCCHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHH
KNLGTNEVASATTANARRLFHLDK
HCCCCCHHHHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]