| Definition | Dehalococcoides ethenogenes 195, complete genome. |
|---|---|
| Accession | NC_002936 |
| Length | 1,469,720 |
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The map label for this gene is regX3 [H]
Identifier: 57234165
GI number: 57234165
Start: 958881
End: 959564
Strand: Direct
Name: regX3 [H]
Synonym: DET1058
Alternate gene names: 57234165
Gene position: 958881-959564 (Clockwise)
Preceding gene: 57234166
Following gene: 57234164
Centisome position: 65.24
GC content: 49.56
Gene sequence:
>684_bases ATGTCTAAGAAAATACTGATAGCCGATGATGAGAATAAAATAGCCGAAATCCTTAAAGCCTATCTTGAACGCGAAGGCTT TAAGGTGAGCGTTACCTATAATGGCAAAGAGGCCCTGGCAAAATTCCGTGAAGAGAACCCCGACCTGATAATACTTGACC TGATGCTGCCCGAAATATCCGGCTGGGATGTCTGCCGCGAAATCCGCAAGGAAAGCCGCGTGCCTATAATCATGCTTACC GCCCGGGATGAACTTACCGACAAGCTGATAGGGCTGGAAATAGGGGCGGATGACTATATGACCAAACCCTTTGAGGCTAA AGAACTGGTAGCCCGCGCCAAAGTCCAGCTGAGGCGGTCTGAACACACCCCTGCTTCCGAGCCGGTACTGGTTATTGACC GCCTGGAAATAGATACGGAACGGCGTTTGGTAAAAATGGACGGGGAGAATATAGACCTGACCGCTACCGAATTTGATATA CTGGCAAATCTGGCCGCAAGCCCGGGGCGGGTTTTCTCCCGTATGCAAATACTGGACAAACTGGGTGAGGCTTACGAAGG CTATGAACGCACTATAGACAGCCACATTAAAAATCTGCGTAAAAAAATAGAGCCCGACCCCGAATCCCCAGCCTATATCC TGACCGTACACGGGGTAGGTTACAAGATGAAAGACAAAGGGTAA
Upstream 100 bases:
>100_bases CTGCCGGGGCTGTGCAATATTATAGCCGGTAAAGATGGGGGCAGGCCCTAAAAGCCTGCCCCTTGCCGTTTGGCAGTTTA CATTATAATATGAGAAGAAT
Downstream 100 bases:
>100_bases AAGAGCGTGTCCCGCTTAAGCTATAAAATTTTCGGTGCCCTGCTGCTGACTGTTTTGCTGTCGGTGGGTCTTACTTCGTT TGCCGCCAACCAGCTGACCG
Product: DNA-binding response regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 227; Mature: 226
Protein sequence:
>227_residues MSKKILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPEISGWDVCREIRKESRVPIIMLT ARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRSEHTPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDI LANLAASPGRVFSRMQILDKLGEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKMKDKG
Sequences:
>Translated_227_residues MSKKILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPEISGWDVCREIRKESRVPIIMLT ARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRSEHTPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDI LANLAASPGRVFSRMQILDKLGEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKMKDKG >Mature_226_residues SKKILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPEISGWDVCREIRKESRVPIIMLTA RDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRSEHTPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDIL ANLAASPGRVFSRMQILDKLGEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKMKDKG
Specific function: Part of the two-component regulatory system senX3/regX3. Once phosphorylated by senX3, activates the expression of several operons/genes involved in phosphate assimilation and metabolism, such as pstSCAB, phnDCE, and phoA [H]
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788394, Length=230, Percent_Identity=42.6086956521739, Blast_Score=178, Evalue=3e-46, Organism=Escherichia coli, GI1790860, Length=225, Percent_Identity=41.7777777777778, Blast_Score=165, Evalue=3e-42, Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=38.2222222222222, Blast_Score=153, Evalue=8e-39, Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=39.0350877192982, Blast_Score=148, Evalue=4e-37, Organism=Escherichia coli, GI1786599, Length=230, Percent_Identity=38.695652173913, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI1786911, Length=221, Percent_Identity=36.1990950226244, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=36.5217391304348, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI1786784, Length=223, Percent_Identity=38.1165919282511, Blast_Score=134, Evalue=5e-33, Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=34.3891402714932, Blast_Score=130, Evalue=6e-32, Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=35.0877192982456, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI1789402, Length=225, Percent_Identity=35.1111111111111, Blast_Score=124, Evalue=4e-30, Organism=Escherichia coli, GI1790552, Length=223, Percent_Identity=36.322869955157, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI145693140, Length=232, Percent_Identity=31.0344827586207, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=34.3891402714932, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=36.1111111111111, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1790437, Length=132, Percent_Identity=28.030303030303, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790299, Length=108, Percent_Identity=28.7037037037037, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI48994928, Length=114, Percent_Identity=35.0877192982456, Blast_Score=62, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 25846; Mature: 25715
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPEIS CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCC GWDVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRS CHHHHHHHHHHCCCCEEEEECCHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHC EHTPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDILANLAASPGRVFSRMQILDK CCCCCCCCEEEEEEEEECCCCEEEEECCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHH LGEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKMKDKG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEECCCC >Mature Secondary Structure SKKILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPEIS CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEEEEECCCCC GWDVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRS CHHHHHHHHHHCCCCEEEEECCHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHC EHTPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDILANLAASPGRVFSRMQILDK CCCCCCCCEEEEEEEEECCCCEEEEECCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHH LGEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKMKDKG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA