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The map label for this gene is dapA [H]

Identifier: 38234385

GI number: 38234385

Start: 1864038

End: 1864868

Strand: Direct

Name: dapA [H]

Synonym: DIP1814

Alternate gene names: 38234385

Gene position: 1864038-1864868 (Clockwise)

Preceding gene: 38234384

Following gene: 38234388

Centisome position: 74.9

GC content: 53.43

Gene sequence:

>831_bases
ATGATCAATGCCAAGGTTCATGTTGCCGTTCCGACCGCGTTTTATGCGGATGAGTCGTTGAATATTTCTGCCACGTTGGC
CCATGCGCAGTATTTGCTGGATCACCAGATTGAGTCTGTGATGTTGTGTGGTTCGACGGGTGAGCAACATAGCCTTGATC
TTGATGAGAAGATTGCGCTTGCCCGCGCGGTGGATCGCGCTGAGTGGCCACAGGGTGCGGAAATCATTTTTGGTGTTTCG
GCGATTCGACAAAGTCACGCGGTGCGCTTAGCGCAGGTGGTGGCGCAGTGCGAGCGTATCGACGCCATCTTGGTGGGGTT
CCCACCGTATATTCGTCCGACTCAGGACCAGGCGCGTCGTTTTGTTACTGCGATTACTCAGACGGCTGGTAAACCTGCGA
TTATTTACAATAATCCGGCGCGCACGGGTTTTGATGCTAGCGCTAGTACGTTGGCGCAATTGTGCATGCTGCCGGATGTA
ATCGGCGTGAAGGATCCTGGTGGTGCGCCGAAGTTGGCGGAGGTTTCTCGTGAGATTGCGCCGTTTCGGGCGCGTTATTA
CGCCGGTGGCGAGTTGGATCTGCATGCGAAGGTGGCGCATGGCTATACGTATTTATCGTCTATCGTGGGCAATATTGCAC
CGGAGGAGACAGTGGCGTGGTTTAATGCGCTGCGCCACGGTGAAGAGTATGAGAGCAGTTCTCGGTTGCAGGAGCTTATC
GACCAACTCTTTGCCCACCACCCCATTCAGTTCTTGAAAGAAAAAATATCGACCCAAGAGGGTATCAACATGGGGTCATG
TCGTCTTCCTCTTGGACCAATTGCGGATTAA

Upstream 100 bases:

>100_bases
AGGTTGTGATCCTGGGTGTCGCGGGTTCGAGCCCCGTCAGCCACCCCGATTGAAAGCCCTCGAGTATTTATGGCTCGGGG
GTTTTCGCTATACTGCCCCA

Downstream 100 bases:

>100_bases
TTAACCGTTGGCGTTGCCGGCCCTCCACGTTGCCCAGTCAATGTTCCAGTCTCCGAGGCCGTCGTAGCCGTTCAGGGTGC
CACCGATGGTGTTTTGTACG

Product: dihydrodipicolinate synthase family protein

Products: NA

Alternate protein names: DHDPS [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MINAKVHVAVPTAFYADESLNISATLAHAQYLLDHQIESVMLCGSTGEQHSLDLDEKIALARAVDRAEWPQGAEIIFGVS
AIRQSHAVRLAQVVAQCERIDAILVGFPPYIRPTQDQARRFVTAITQTAGKPAIIYNNPARTGFDASASTLAQLCMLPDV
IGVKDPGGAPKLAEVSREIAPFRARYYAGGELDLHAKVAHGYTYLSSIVGNIAPEETVAWFNALRHGEEYESSSRLQELI
DQLFAHHPIQFLKEKISTQEGINMGSCRLPLGPIAD

Sequences:

>Translated_276_residues
MINAKVHVAVPTAFYADESLNISATLAHAQYLLDHQIESVMLCGSTGEQHSLDLDEKIALARAVDRAEWPQGAEIIFGVS
AIRQSHAVRLAQVVAQCERIDAILVGFPPYIRPTQDQARRFVTAITQTAGKPAIIYNNPARTGFDASASTLAQLCMLPDV
IGVKDPGGAPKLAEVSREIAPFRARYYAGGELDLHAKVAHGYTYLSSIVGNIAPEETVAWFNALRHGEEYESSSRLQELI
DQLFAHHPIQFLKEKISTQEGINMGSCRLPLGPIAD
>Mature_276_residues
MINAKVHVAVPTAFYADESLNISATLAHAQYLLDHQIESVMLCGSTGEQHSLDLDEKIALARAVDRAEWPQGAEIIFGVS
AIRQSHAVRLAQVVAQCERIDAILVGFPPYIRPTQDQARRFVTAITQTAGKPAIIYNNPARTGFDASASTLAQLCMLPDV
IGVKDPGGAPKLAEVSREIAPFRARYYAGGELDLHAKVAHGYTYLSSIVGNIAPEETVAWFNALRHGEEYESSSRLQELI
DQLFAHHPIQFLKEKISTQEGINMGSCRLPLGPIAD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; first step. [C]

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family [H]

Homologues:

Organism=Escherichia coli, GI1788823, Length=274, Percent_Identity=24.8175182481752, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 840 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR005263
- InterPro:   IPR002220
- InterPro:   IPR020625
- InterPro:   IPR020624 [H]

Pfam domain/function: PF00701 DHDPS [H]

EC number: =4.2.1.52 [H]

Molecular weight: Translated: 30100; Mature: 30100

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINAKVHVAVPTAFYADESLNISATLAHAQYLLDHQIESVMLCGSTGEQHSLDLDEKIAL
CCCCEEEEEECEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHH
ARAVDRAEWPQGAEIIFGVSAIRQSHAVRLAQVVAQCERIDAILVGFPPYIRPTQDQARR
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHH
FVTAITQTAGKPAIIYNNPARTGFDASASTLAQLCMLPDVIGVKDPGGAPKLAEVSREIA
HHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHH
PFRARYYAGGELDLHAKVAHGYTYLSSIVGNIAPEETVAWFNALRHGEEYESSSRLQELI
HHHHHEECCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
DQLFAHHPIQFLKEKISTQEGINMGSCRLPLGPIAD
HHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MINAKVHVAVPTAFYADESLNISATLAHAQYLLDHQIESVMLCGSTGEQHSLDLDEKIAL
CCCCEEEEEECEEEECCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHH
ARAVDRAEWPQGAEIIFGVSAIRQSHAVRLAQVVAQCERIDAILVGFPPYIRPTQDQARR
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHH
FVTAITQTAGKPAIIYNNPARTGFDASASTLAQLCMLPDVIGVKDPGGAPKLAEVSREIA
HHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHH
PFRARYYAGGELDLHAKVAHGYTYLSSIVGNIAPEETVAWFNALRHGEEYESSSRLQELI
HHHHHEECCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
DQLFAHHPIQFLKEKISTQEGINMGSCRLPLGPIAD
HHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA