| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is ucpA [C]
Identifier: 38234383
GI number: 38234383
Start: 1862409
End: 1863209
Strand: Direct
Name: ucpA [C]
Synonym: DIP1812
Alternate gene names: 38234383
Gene position: 1862409-1863209 (Clockwise)
Preceding gene: 38234382
Following gene: 38234384
Centisome position: 74.84
GC content: 55.43
Gene sequence:
>801_bases ATGACTCTTCCTTCTCCATCGGTTCATGCGTTTGCTGTTGTTACGGGCGCTAGTCAAGGTATTGGACGTGCGATGGCTCG GGATTTGGCTCGGATGGGCCATAATGTGTTGTTGGTTGCTCGGCGCGAGGATGTGCTGCGCGAGTTGGCGGATCAGTTGA TGACTGACCACAGCGTGGTGGCTGAGGTGTACCCGTGTGATTTGGCTGATGCTGATGATTTGCGTGGTCTTGTTGCGGAG TTGCAGGGCCGTGAGGTCAACATCATTGTTAATTCCGCTGGTATTGCTAGTTTTGGCCCGTTTATGGATCAGGATTGGCA GTATGAGTCGAAGCAGTTTGATTTGAATGCTCGAGCGGTTTTTGAACTCACTCATGCGGTGTTGCCGGGGATGGTGGCGC GGAAGTCGGGGGCGATTTGTAATGTGGGCTCGGCTGCGGGCAATGTGCCGATTCCGAATAATGCGACGTATGTGTTAACT AAGGCGGGGGTGAATGCGTTTACGGAGGCGTTGCATTATGAACTGCGGAAGTCGGGGGTGGCGTGTACGTTGTTGGCGCC GGGGCCGGTGCGTGAGGCTGTGATTCCGGATGCGGAGAAGTCGATTGTGGATCGTGTTGTGCCGGATTTCTTGTGGACGA CCTATGAGTCTTGCTCGAGAGAAACGTTGGAGGCGATGGCGTCGAATAGGCGTCGTGTGGTGCCAGGGCCTCTGTCGAAG ATAATGAATGCGGTGTCGTTGGTGGCGCCTACGGCGGTGTTGGCTCCTGTGATGGGGTGGTTCTACGCCAAGATGGCGTA G
Upstream 100 bases:
>100_bases ATGGTCGCACTGTGGTGGTTGTTAACCCTGACGCTGAGTAAGTCCGTAGGATGTGGGAGAGTTTTATCTTTCCTACATCC TCGACTTTTTCGGAGGCATC
Downstream 100 bases:
>100_bases AGGGGTAGCGTTATCGACATGGTAGAAACTGTTCACCCAAAAAATGATCGTTTAGTGTGGATTGACCTTGAGATGACTGG CCTTGAGTTGGATCGCCATG
Product: putative short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MTLPSPSVHAFAVVTGASQGIGRAMARDLARMGHNVLLVARREDVLRELADQLMTDHSVVAEVYPCDLADADDLRGLVAE LQGREVNIIVNSAGIASFGPFMDQDWQYESKQFDLNARAVFELTHAVLPGMVARKSGAICNVGSAAGNVPIPNNATYVLT KAGVNAFTEALHYELRKSGVACTLLAPGPVREAVIPDAEKSIVDRVVPDFLWTTYESCSRETLEAMASNRRRVVPGPLSK IMNAVSLVAPTAVLAPVMGWFYAKMA
Sequences:
>Translated_266_residues MTLPSPSVHAFAVVTGASQGIGRAMARDLARMGHNVLLVARREDVLRELADQLMTDHSVVAEVYPCDLADADDLRGLVAE LQGREVNIIVNSAGIASFGPFMDQDWQYESKQFDLNARAVFELTHAVLPGMVARKSGAICNVGSAAGNVPIPNNATYVLT KAGVNAFTEALHYELRKSGVACTLLAPGPVREAVIPDAEKSIVDRVVPDFLWTTYESCSRETLEAMASNRRRVVPGPLSK IMNAVSLVAPTAVLAPVMGWFYAKMA >Mature_265_residues TLPSPSVHAFAVVTGASQGIGRAMARDLARMGHNVLLVARREDVLRELADQLMTDHSVVAEVYPCDLADADDLRGLVAEL QGREVNIIVNSAGIASFGPFMDQDWQYESKQFDLNARAVFELTHAVLPGMVARKSGAICNVGSAAGNVPIPNNATYVLTK AGVNAFTEALHYELRKSGVACTLLAPGPVREAVIPDAEKSIVDRVVPDFLWTTYESCSRETLEAMASNRRRVVPGPLSKI MNAVSLVAPTAVLAPVMGWFYAKMA
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705855, Length=187, Percent_Identity=34.2245989304813, Blast_Score=111, Evalue=9e-25, Organism=Homo sapiens, GI226371731, Length=182, Percent_Identity=34.0659340659341, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI4557649, Length=240, Percent_Identity=27.5, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI7706318, Length=232, Percent_Identity=28.448275862069, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI40254992, Length=198, Percent_Identity=29.2929292929293, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI32483357, Length=196, Percent_Identity=31.6326530612245, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI142976729, Length=203, Percent_Identity=30.0492610837438, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI109715829, Length=189, Percent_Identity=31.2169312169312, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI32455239, Length=229, Percent_Identity=27.9475982532751, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI5031765, Length=229, Percent_Identity=27.9475982532751, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI40807363, Length=201, Percent_Identity=24.3781094527363, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI7657478, Length=251, Percent_Identity=26.2948207171315, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI4503817, Length=184, Percent_Identity=28.804347826087, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=31.6831683168317, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI157739938, Length=186, Percent_Identity=26.8817204301075, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI126723191, Length=180, Percent_Identity=31.1111111111111, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI44680136, Length=183, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI44680133, Length=183, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI17738292, Length=183, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI7705925, Length=164, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI19923817, Length=195, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI66933014, Length=172, Percent_Identity=27.906976744186, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI87082100, Length=186, Percent_Identity=37.0967741935484, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=34.2391304347826, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=30.2702702702703, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786701, Length=200, Percent_Identity=29, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1788459, Length=204, Percent_Identity=26.4705882352941, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1790717, Length=181, Percent_Identity=25.9668508287293, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87082160, Length=206, Percent_Identity=25.2427184466019, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787526, Length=223, Percent_Identity=25.1121076233184, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789378, Length=192, Percent_Identity=28.6458333333333, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17560176, Length=198, Percent_Identity=32.3232323232323, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71994604, Length=182, Percent_Identity=36.2637362637363, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI25152911, Length=185, Percent_Identity=33.5135135135135, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71994600, Length=185, Percent_Identity=30.2702702702703, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17567345, Length=238, Percent_Identity=26.0504201680672, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI212646214, Length=203, Percent_Identity=26.1083743842365, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17559552, Length=188, Percent_Identity=29.7872340425532, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562904, Length=191, Percent_Identity=32.9842931937173, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17561402, Length=203, Percent_Identity=30.0492610837438, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17557668, Length=188, Percent_Identity=27.6595744680851, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=28.125, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193203117, Length=250, Percent_Identity=26, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203115, Length=250, Percent_Identity=26, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI25147288, Length=193, Percent_Identity=29.0155440414508, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560150, Length=188, Percent_Identity=30.8510638297872, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17557780, Length=235, Percent_Identity=25.9574468085106, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17562990, Length=189, Percent_Identity=30.1587301587302, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17538480, Length=191, Percent_Identity=30.3664921465969, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17562906, Length=190, Percent_Identity=31.0526315789474, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=190, Percent_Identity=34.2105263157895, Blast_Score=89, Evalue=6e-19, Organism=Saccharomyces cerevisiae, GI6319635, Length=191, Percent_Identity=27.7486910994764, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6322067, Length=169, Percent_Identity=28.9940828402367, Blast_Score=65, Evalue=9e-12, Organism=Drosophila melanogaster, GI161076933, Length=184, Percent_Identity=35.8695652173913, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24584748, Length=184, Percent_Identity=35.8695652173913, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI28574402, Length=196, Percent_Identity=32.1428571428571, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24584744, Length=196, Percent_Identity=32.1428571428571, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24640442, Length=186, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=4e-21, Organism=Drosophila melanogaster, GI24584752, Length=227, Percent_Identity=30.3964757709251, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI21357041, Length=181, Percent_Identity=32.0441988950276, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI21358495, Length=184, Percent_Identity=30.4347826086957, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI24639444, Length=205, Percent_Identity=33.1707317073171, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI23397609, Length=179, Percent_Identity=35.7541899441341, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=30.9644670050761, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI28571526, Length=181, Percent_Identity=30.939226519337, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24580925, Length=196, Percent_Identity=30.1020408163265, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=31.7919075144509, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24643142, Length=163, Percent_Identity=32.5153374233129, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24649181, Length=190, Percent_Identity=30.5263157894737, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI281364892, Length=190, Percent_Identity=30, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI116007238, Length=188, Percent_Identity=30.3191489361702, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24644339, Length=182, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21356301, Length=211, Percent_Identity=28.9099526066351, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640492, Length=168, Percent_Identity=25.5952380952381, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641388, Length=213, Percent_Identity=32.8638497652582, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21355319, Length=187, Percent_Identity=28.3422459893048, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28609; Mature: 28478
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPSPSVHAFAVVTGASQGIGRAMARDLARMGHNVLLVARREDVLRELADQLMTDHSVV CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCHHHH AEVYPCDLADADDLRGLVAELQGREVNIIVNSAGIASFGPFMDQDWQYESKQFDLNARAV HHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH FELTHAVLPGMVARKSGAICNVGSAAGNVPIPNNATYVLTKAGVNAFTEALHYELRKSGV HHHHHHHHCCHHHHCCCCEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCC ACTLLAPGPVREAVIPDAEKSIVDRVVPDFLWTTYESCSRETLEAMASNRRRVVPGPLSK EEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH IMNAVSLVAPTAVLAPVMGWFYAKMA HHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TLPSPSVHAFAVVTGASQGIGRAMARDLARMGHNVLLVARREDVLRELADQLMTDHSVV CCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCHHHH AEVYPCDLADADDLRGLVAELQGREVNIIVNSAGIASFGPFMDQDWQYESKQFDLNARAV HHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH FELTHAVLPGMVARKSGAICNVGSAAGNVPIPNNATYVLTKAGVNAFTEALHYELRKSGV HHHHHHHHCCHHHHCCCCEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCC ACTLLAPGPVREAVIPDAEKSIVDRVVPDFLWTTYESCSRETLEAMASNRRRVVPGPLSK EEEEECCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH IMNAVSLVAPTAVLAPVMGWFYAKMA HHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12950922 [H]