| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is cobIJ [H]
Identifier: 38233821
GI number: 38233821
Start: 1234487
End: 1235983
Strand: Direct
Name: cobIJ [H]
Synonym: DIP1233
Alternate gene names: 38233821
Gene position: 1234487-1235983 (Clockwise)
Preceding gene: 38233820
Following gene: 38233828
Centisome position: 49.6
GC content: 49.3
Gene sequence:
>1497_bases ATGACAGCTGTGACCGCAGGAAAGCTTATCGGAGTCGGAGTAGGTCCTGGTGATCCTGAGCTTCTTACCGTTAAAGCAGT AAAAGCAATCAAGTCGGCAGATGTTATTGTGTTCCATGCGAAGCCGAATGGTCAATCGGCTGCTCATCGCATTGCGGAGT CGTATATTCGCCAAGACCAAGTACTCGAGTTGCTGGAATACCCTGTTACGACCGGTGTCACTGAGCATCCGGGTGGGTAT GCTGGCGCTATGGCAGCATTTTATGCCAGCGTGGGCGAACGCTTACGTGATCATCTGATCGAAGGTAAGAACGTAGTAGT TCTTGCGCTTGGAGATCCGATGCTTTATAGCTCATATCAGCATATTCATCGATTGTTGTCTGAAGATTTTAACGCTGAAA TCATTCCTGGTATTCCTTCGATCACTTCAGCTGCTGATGTGCTAGGAAAACCTCTATGCGAAGATGACGATGTACTGACT ATCCTTCCAGGAACATTGCCTCATAGCGAACTCGTGGCACGGCTGTCAGATTCTGATGGTGCTGTCGTCATGAAACTCGG CCGAACATTCGATAAAGTCCGCAAAGCCATGATCGAAGCTGGCGTAGCAGATCGTGCTCACGTGGTGGTACGCGTCGGAA TGGCTGATCAGCATTCAGTTCCTGTCATGGAAGCAGACCCACAGGCCATTCCCTATTTCTCCGTAGCTGTGGTTCCTTCT ATAACTGATACCAATGGAGACTCAGGTGATAAACAACAAGGCGAAGTAGTAGTTGTTGGACTCGGCCCAGGCGGTCATCG TTGGACAACTCCCGAAGTTATGGCTGAGCTTAAACAAGCCACCGACATCGTTGGATACTCTACGTATGTAAATCGAGTGC CGCAGCAAGCGGGACAACGTAGACACCTTTCTGATAACAAAGTCGAAGCGGAACGGGCGGCCATGGCGTTGGATATGGCA AAACAAGGCCGCAAAGTTGCTGTAGTTTCTTCTGGTGATCCTGGAGTATTTGCGATGGCAGCAGCAGTCTTGGAAACAGC TGATGACGATCAGTGGCGTGAAGTACCGGTTCGCATCATCCCAGGAATGACCGCAGCTCAAGCCGTTGCTTCTCGTGTAG GTGCACCTTTGGGGCACGATTTTGGCATGATTTCGTTGTCTAACCGTCTAAAGCCTTTCGAAATTGTAGAAAAACGAATT CGAGCATTAGCCAGTGCTGATATGGCTTTTGCTTGCTACAACCCTGCGTCAAAAGAACGACGTTGGCAAGTCGCGCGCAT GAAAGAAATCGTTAGTGAGTATCAGGCGGGATCAACACCTGTCATCGTTGCTCGTGCAGTGGGATCTGATCAAGAAACAG TCACAGTGACGACGCTTGAAGACTTTGATCCGGATATTGTTGATATGCGAACAATGGTCATTATTGGAGCATCGACGACT AAAACCTATCAAGGTGGCGATGGAGTCCGAGTATTTACCTCGCGGTGGTACACCTAG
Upstream 100 bases:
>100_bases ACTTAGGCGTCGAATTTGTCACTGTTCACGGGCGTCGTGGCGGATCAGCTATCACCTGTGCCGCGATCAATGCTCTGGCT ACGGAAAAGGAGATTCTTCC
Downstream 100 bases:
>100_bases TTTTTGAGCAATTAAATCGGTGTGGCATCGAGCTTTTAGATGAGAAAAGCTCGAGGCCACACCGATTATTTACATCCGGA GTTACAAGGAATCAATAATT
Product: putative bifunctional cobalamin biosynthesis protein
Products: NA
Alternate protein names: Precorrin-2 C(20)-methyltransferase; S-adenosyl-L-methionine--precorrin-2 methyltransferase; SP2MT; Precorrin-3B C17-methyltransferase; S-adenosyl-L-methionine--precorrin-3B methyltransferase [H]
Number of amino acids: Translated: 498; Mature: 497
Protein sequence:
>498_residues MTAVTAGKLIGVGVGPGDPELLTVKAVKAIKSADVIVFHAKPNGQSAAHRIAESYIRQDQVLELLEYPVTTGVTEHPGGY AGAMAAFYASVGERLRDHLIEGKNVVVLALGDPMLYSSYQHIHRLLSEDFNAEIIPGIPSITSAADVLGKPLCEDDDVLT ILPGTLPHSELVARLSDSDGAVVMKLGRTFDKVRKAMIEAGVADRAHVVVRVGMADQHSVPVMEADPQAIPYFSVAVVPS ITDTNGDSGDKQQGEVVVVGLGPGGHRWTTPEVMAELKQATDIVGYSTYVNRVPQQAGQRRHLSDNKVEAERAAMALDMA KQGRKVAVVSSGDPGVFAMAAAVLETADDDQWREVPVRIIPGMTAAQAVASRVGAPLGHDFGMISLSNRLKPFEIVEKRI RALASADMAFACYNPASKERRWQVARMKEIVSEYQAGSTPVIVARAVGSDQETVTVTTLEDFDPDIVDMRTMVIIGASTT KTYQGGDGVRVFTSRWYT
Sequences:
>Translated_498_residues MTAVTAGKLIGVGVGPGDPELLTVKAVKAIKSADVIVFHAKPNGQSAAHRIAESYIRQDQVLELLEYPVTTGVTEHPGGY AGAMAAFYASVGERLRDHLIEGKNVVVLALGDPMLYSSYQHIHRLLSEDFNAEIIPGIPSITSAADVLGKPLCEDDDVLT ILPGTLPHSELVARLSDSDGAVVMKLGRTFDKVRKAMIEAGVADRAHVVVRVGMADQHSVPVMEADPQAIPYFSVAVVPS ITDTNGDSGDKQQGEVVVVGLGPGGHRWTTPEVMAELKQATDIVGYSTYVNRVPQQAGQRRHLSDNKVEAERAAMALDMA KQGRKVAVVSSGDPGVFAMAAAVLETADDDQWREVPVRIIPGMTAAQAVASRVGAPLGHDFGMISLSNRLKPFEIVEKRI RALASADMAFACYNPASKERRWQVARMKEIVSEYQAGSTPVIVARAVGSDQETVTVTTLEDFDPDIVDMRTMVIIGASTT KTYQGGDGVRVFTSRWYT >Mature_497_residues TAVTAGKLIGVGVGPGDPELLTVKAVKAIKSADVIVFHAKPNGQSAAHRIAESYIRQDQVLELLEYPVTTGVTEHPGGYA GAMAAFYASVGERLRDHLIEGKNVVVLALGDPMLYSSYQHIHRLLSEDFNAEIIPGIPSITSAADVLGKPLCEDDDVLTI LPGTLPHSELVARLSDSDGAVVMKLGRTFDKVRKAMIEAGVADRAHVVVRVGMADQHSVPVMEADPQAIPYFSVAVVPSI TDTNGDSGDKQQGEVVVVGLGPGGHRWTTPEVMAELKQATDIVGYSTYVNRVPQQAGQRRHLSDNKVEAERAAMALDMAK QGRKVAVVSSGDPGVFAMAAAVLETADDDQWREVPVRIIPGMTAAQAVASRVGAPLGHDFGMISLSNRLKPFEIVEKRIR ALASADMAFACYNPASKERRWQVARMKEIVSEYQAGSTPVIVARAVGSDQETVTVTTLEDFDPDIVDMRTMVIIGASTTK TYQGGDGVRVFTSRWYT
Specific function: Methylates precorrin-2 at the C-20 position to produce precorrin-3A [H]
COG id: COG1010
COG function: function code H; Precorrin-3B methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the precorrin methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000878 - InterPro: IPR014777 - InterPro: IPR006364 - InterPro: IPR006363 - InterPro: IPR003043 [H]
Pfam domain/function: PF00590 TP_methylase [H]
EC number: =2.1.1.130; =2.1.1.131 [H]
Molecular weight: Translated: 53412; Mature: 53280
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: PS00840 SUMT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAVTAGKLIGVGVGPGDPELLTVKAVKAIKSADVIVFHAKPNGQSAAHRIAESYIRQDQ CCCEECCCEEEEECCCCCCCEEEHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHH VLELLEYPVTTGVTEHPGGYAGAMAAFYASVGERLRDHLIEGKNVVVLALGDPMLYSSYQ HHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH HIHRLLSEDFNAEIIPGIPSITSAADVLGKPLCEDDDVLTILPGTLPHSELVARLSDSDG HHHHHHHCCCCCEECCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCC AVVMKLGRTFDKVRKAMIEAGVADRAHVVVRVGMADQHSVPVMEADPQAIPYFSVAVVPS EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECC ITDTNGDSGDKQQGEVVVVGLGPGGHRWTTPEVMAELKQATDIVGYSTYVNRVPQQAGQR CCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RHLSDNKVEAERAAMALDMAKQGRKVAVVSSGDPGVFAMAAAVLETADDDQWREVPVRII CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHHCCCEEEE PGMTAAQAVASRVGAPLGHDFGMISLSNRLKPFEIVEKRIRALASADMAFACYNPASKER CCCHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHH RWQVARMKEIVSEYQAGSTPVIVARAVGSDQETVTVTTLEDFDPDIVDMRTMVIIGASTT HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCCCHHCEEEEEEEECCCC KTYQGGDGVRVFTSRWYT CEECCCCCEEEECCCCCC >Mature Secondary Structure TAVTAGKLIGVGVGPGDPELLTVKAVKAIKSADVIVFHAKPNGQSAAHRIAESYIRQDQ CCEECCCEEEEECCCCCCCEEEHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHH VLELLEYPVTTGVTEHPGGYAGAMAAFYASVGERLRDHLIEGKNVVVLALGDPMLYSSYQ HHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH HIHRLLSEDFNAEIIPGIPSITSAADVLGKPLCEDDDVLTILPGTLPHSELVARLSDSDG HHHHHHHCCCCCEECCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCC AVVMKLGRTFDKVRKAMIEAGVADRAHVVVRVGMADQHSVPVMEADPQAIPYFSVAVVPS EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECC ITDTNGDSGDKQQGEVVVVGLGPGGHRWTTPEVMAELKQATDIVGYSTYVNRVPQQAGQR CCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC RHLSDNKVEAERAAMALDMAKQGRKVAVVSSGDPGVFAMAAAVLETADDDQWREVPVRII CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHHCCCEEEE PGMTAAQAVASRVGAPLGHDFGMISLSNRLKPFEIVEKRIRALASADMAFACYNPASKER CCCHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHH RWQVARMKEIVSEYQAGSTPVIVARAVGSDQETVTVTTLEDFDPDIVDMRTMVIIGASTT HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEECCCCCCHHCEEEEEEEECCCC KTYQGGDGVRVFTSRWYT CEECCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]