Click here to switch to the map view.

The map label for this gene is oppA [H]

Identifier: 38233552

GI number: 38233552

Start: 927733

End: 929322

Strand: Direct

Name: oppA [H]

Synonym: DIP0956

Alternate gene names: 38233552

Gene position: 927733-929322 (Clockwise)

Preceding gene: 38233551

Following gene: 38233553

Centisome position: 37.28

GC content: 52.52

Gene sequence:

>1590_bases
ATGACGCTAAAGAAGACTCTCGCCGTCGGCATGACCGCGGCACTAGCTCTAGGCCTGACTGCCTGCTCTTCGGATCCCTC
ATCCGGAAGCGCTGGCGGCGCGGGTGACAATTATGTTTTGGCAAACGGATCAGAGCCACAAAACCCTCTGATTCCGGCCA
ATACGAACGAGGTCGGCGGTGGTCGAGTCGTTGACATCATCTATGGCGGTCTGGTCTATTACGACACCGAGGGCAAAGCG
CACAACGAGCAAGCAGAATCCATCGAACTCGAAGGCGATCGTATCTACAAGATCACCTTGAAAGATGGCCTGAAGTTCTC
CGACGGTACCCCAATCAAGGCAGAGAACTTTGTGAAGACGTGGAACTATGCCGTCGCCAACGATCAGCTCAACGCTTCCT
TCTTTGAAGGCATCAAGGGCTTTAAAGAAGGTGTCAAGGAGCTCGAGGGCCTCAAGGTAGTAGACGACAAGACCTTCACT
GTCGAACTTGATCAGCCAGAATCCGACTTCCCATCCCGCTTGGGTTACTCAGCTTTCTTCGCGCTACCAGATATTGCTTT
TGACGATATGGCAGCCTTCGGCGAAAACCCTGTGTCCTCCGGTCCTTACAAGTTGGCGGAGTGGAACCACAACGAGTCCT
TGACCATCGTTCCTAACGAGGAATACCAGGGCGATCGCAAGGCGAAAAACGACGGTGTGAAGTTTGTCTTCTATGCATCC
CAAGACGCTGCATACTCCGACTTGCTCGCAGGCAATTTGGATGTTCTCGACCAAGTTCCAGACTCCGCATTTGCTACCTA
TAAGGATGAACTAGGCGATCGTGCGGTTAACCAGCCAGCTGCTGTCTTCCAGTCCTTTACCATCCCAGAAAAGCTGGAAC
ACTTCTCTGGTGAAGAAGGTGCACTGCGTCGCGCAGCAATCTCTCACGCAATTAACCGTGAAGAAATCACCAAGACGATC
TTCCAAGATACCCGCACCCCAGCTAAGGACTTCTCCTCGCCAGTCGTTGACGGCTACAAGGAAGGTCTGAAGGGCTCTGA
GGTAGTCAAGTTTGATTCCGCAAAGGCAAAGGAACTGTGGGCTCAAGCTGACAAGATCTCCAAGTTCACCGGAGAGTTCA
CCATTGCCTACAACTCTGACGGTGGCCACCAGTCGTGGGTTGATGCAGTAGCAAACCAACTCAAGAACAACCTCGGTATC
GCAGCAAGCGGTAAGCCATACCCAGACTTCAAGTCGCTTCGCGACGAAGTCACTAACCACACCATTACCGGAGCATTCCG
TACCGGCTGGCAGGGTGATTACCCACTGCTCGGCAACTTCTTGCAGCCTCTTTACGCTACAAACGCAAGCTCCAACGATG
GTCAGTACAGCAACCCTGCGTTTGACGCCAAGCTAGAAGAAGCCGCAGGCGCTAAGTCTGTTGAAGAAGGCCTCAAGCTC
TACCAAGAAGCAGAAGAAATCCTCTTCAAGGATCTCCCAGCTATCCCACTGTGGTACGCAAACGTCAACGGTGGCTCTTC
TGACAAAGTCTCCAACGTGACTTTCAACTGGAAGTCCGTTGCAGCATACGAACAGATCACCAAGGGATAA

Upstream 100 bases:

>100_bases
CGTTACGGGATAGGATCTTGCTCAAGCAACGAAAGTTTCCTTCTAGCCATACGCGCGGACGCTGTTGCGAATGATGTCCA
CATCCCTTGGGAGGTCTCAC

Downstream 100 bases:

>100_bases
CACCCCTGCCCGTGAACTCCGTCGTGAGCCCCGCGTCACCACACGCGGGGCTTCGGCGACGGATCTAGATGTTGAAATAA
GGAACCACATATGCTGCGTT

Product: putative peptide transport system secreted protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 528

Protein sequence:

>529_residues
MTLKKTLAVGMTAALALGLTACSSDPSSGSAGGAGDNYVLANGSEPQNPLIPANTNEVGGGRVVDIIYGGLVYYDTEGKA
HNEQAESIELEGDRIYKITLKDGLKFSDGTPIKAENFVKTWNYAVANDQLNASFFEGIKGFKEGVKELEGLKVVDDKTFT
VELDQPESDFPSRLGYSAFFALPDIAFDDMAAFGENPVSSGPYKLAEWNHNESLTIVPNEEYQGDRKAKNDGVKFVFYAS
QDAAYSDLLAGNLDVLDQVPDSAFATYKDELGDRAVNQPAAVFQSFTIPEKLEHFSGEEGALRRAAISHAINREEITKTI
FQDTRTPAKDFSSPVVDGYKEGLKGSEVVKFDSAKAKELWAQADKISKFTGEFTIAYNSDGGHQSWVDAVANQLKNNLGI
AASGKPYPDFKSLRDEVTNHTITGAFRTGWQGDYPLLGNFLQPLYATNASSNDGQYSNPAFDAKLEEAAGAKSVEEGLKL
YQEAEEILFKDLPAIPLWYANVNGGSSDKVSNVTFNWKSVAAYEQITKG

Sequences:

>Translated_529_residues
MTLKKTLAVGMTAALALGLTACSSDPSSGSAGGAGDNYVLANGSEPQNPLIPANTNEVGGGRVVDIIYGGLVYYDTEGKA
HNEQAESIELEGDRIYKITLKDGLKFSDGTPIKAENFVKTWNYAVANDQLNASFFEGIKGFKEGVKELEGLKVVDDKTFT
VELDQPESDFPSRLGYSAFFALPDIAFDDMAAFGENPVSSGPYKLAEWNHNESLTIVPNEEYQGDRKAKNDGVKFVFYAS
QDAAYSDLLAGNLDVLDQVPDSAFATYKDELGDRAVNQPAAVFQSFTIPEKLEHFSGEEGALRRAAISHAINREEITKTI
FQDTRTPAKDFSSPVVDGYKEGLKGSEVVKFDSAKAKELWAQADKISKFTGEFTIAYNSDGGHQSWVDAVANQLKNNLGI
AASGKPYPDFKSLRDEVTNHTITGAFRTGWQGDYPLLGNFLQPLYATNASSNDGQYSNPAFDAKLEEAAGAKSVEEGLKL
YQEAEEILFKDLPAIPLWYANVNGGSSDKVSNVTFNWKSVAAYEQITKG
>Mature_528_residues
TLKKTLAVGMTAALALGLTACSSDPSSGSAGGAGDNYVLANGSEPQNPLIPANTNEVGGGRVVDIIYGGLVYYDTEGKAH
NEQAESIELEGDRIYKITLKDGLKFSDGTPIKAENFVKTWNYAVANDQLNASFFEGIKGFKEGVKELEGLKVVDDKTFTV
ELDQPESDFPSRLGYSAFFALPDIAFDDMAAFGENPVSSGPYKLAEWNHNESLTIVPNEEYQGDRKAKNDGVKFVFYASQ
DAAYSDLLAGNLDVLDQVPDSAFATYKDELGDRAVNQPAAVFQSFTIPEKLEHFSGEEGALRRAAISHAINREEITKTIF
QDTRTPAKDFSSPVVDGYKEGLKGSEVVKFDSAKAKELWAQADKISKFTGEFTIAYNSDGGHQSWVDAVANQLKNNLGIA
ASGKPYPDFKSLRDEVTNHTITGAFRTGWQGDYPLLGNFLQPLYATNASSNDGQYSNPAFDAKLEEAAGAKSVEEGLKLY
QEAEEILFKDLPAIPLWYANVNGGSSDKVSNVTFNWKSVAAYEQITKG

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=522, Percent_Identity=26.6283524904215, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI87081878, Length=528, Percent_Identity=26.5151515151515, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1789397, Length=484, Percent_Identity=28.3057851239669, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787052, Length=500, Percent_Identity=25.2, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1787762, Length=525, Percent_Identity=23.8095238095238, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57408; Mature: 57277

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKKTLAVGMTAALALGLTACSSDPSSGSAGGAGDNYVLANGSEPQNPLIPANTNEVGG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
GRVVDIIYGGLVYYDTEGKAHNEQAESIELEGDRIYKITLKDGLKFSDGTPIKAENFVKT
CEEEEEEECCEEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCHHHHHHH
WNYAVANDQLNASFFEGIKGFKEGVKELEGLKVVDDKTFTVELDQPESDFPSRLGYSAFF
CCEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCHHHCCCHHEE
ALPDIAFDDMAAFGENPVSSGPYKLAEWNHNESLTIVPNEEYQGDRKAKNDGVKFVFYAS
CCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEC
QDAAYSDLLAGNLDVLDQVPDSAFATYKDELGDRAVNQPAAVFQSFTIPEKLEHFSGEEG
CCCHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCCH
ALRRAAISHAINREEITKTIFQDTRTPAKDFSSPVVDGYKEGLKGSEVVKFDSAKAKELW
HHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCCEEEEECCHHHHHHH
AQADKISKFTGEFTIAYNSDGGHQSWVDAVANQLKNNLGIAASGKPYPDFKSLRDEVTNH
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCC
TITGAFRTGWQGDYPLLGNFLQPLYATNASSNDGQYSNPAFDAKLEEAAGAKSVEEGLKL
EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
YQEAEEILFKDLPAIPLWYANVNGGSSDKVSNVTFNWKSVAAYEQITKG
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHCC
>Mature Secondary Structure 
TLKKTLAVGMTAALALGLTACSSDPSSGSAGGAGDNYVLANGSEPQNPLIPANTNEVGG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
GRVVDIIYGGLVYYDTEGKAHNEQAESIELEGDRIYKITLKDGLKFSDGTPIKAENFVKT
CEEEEEEECCEEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCCCCCCCCCHHHHHHH
WNYAVANDQLNASFFEGIKGFKEGVKELEGLKVVDDKTFTVELDQPESDFPSRLGYSAFF
CCEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCHHHCCCHHEE
ALPDIAFDDMAAFGENPVSSGPYKLAEWNHNESLTIVPNEEYQGDRKAKNDGVKFVFYAS
CCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEC
QDAAYSDLLAGNLDVLDQVPDSAFATYKDELGDRAVNQPAAVFQSFTIPEKLEHFSGEEG
CCCHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCCCH
ALRRAAISHAINREEITKTIFQDTRTPAKDFSSPVVDGYKEGLKGSEVVKFDSAKAKELW
HHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCCEEEEECCHHHHHHH
AQADKISKFTGEFTIAYNSDGGHQSWVDAVANQLKNNLGIAASGKPYPDFKSLRDEVTNH
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCC
TITGAFRTGWQGDYPLLGNFLQPLYATNASSNDGQYSNPAFDAKLEEAAGAKSVEEGLKL
EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHH
YQEAEEILFKDLPAIPLWYANVNGGSSDKVSNVTFNWKSVAAYEQITKG
HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2187863; 9097039; 9278503; 2015910; 9298646; 9600841 [H]