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The map label for this gene is dppB [H]

Identifier: 38233553

GI number: 38233553

Start: 929413

End: 930339

Strand: Direct

Name: dppB [H]

Synonym: DIP0957

Alternate gene names: 38233553

Gene position: 929413-930339 (Clockwise)

Preceding gene: 38233552

Following gene: 38233554

Centisome position: 37.35

GC content: 51.56

Gene sequence:

>927_bases
ATGCTGCGTTATATTGGGCGCCGATTGCTCCAAATGATCCCCGTGTTCTTTGGTGCAACCCTTTTGCTCTACGCACTCGT
CTTCTTGATGCCTGGCGATCCAGTGGCCGCCCTCGGCGGCGACAGAGGCCTAACCGAAGCAGCCCGCGCTCGCATCTCAG
CCGAGTACAACTTGGACAAACCCTTCCTCGTTCAATACTTGCTCTACATCAAGGGTATTTTTCAGCTGGACTTTGGTACC
ACATTTTCCGGCCGCCCAGTGGCAGAAGCAATGGCTCATGCATTTCCTGTGACTATCAAGTTAGCTGTCATGGCACTGAT
CTTTGAAGCTGTGTTCGGTGTTATTTTTGGTGTGATCGCCGGTATGCGTCGCGGTGGCATATTTGACTCCACCGTTTTGG
TCCTCTCGCTTCTTGTTATTGCAGTGCCTTCCTTCGTGATTGGCTTTGTTTTCCAGTTCTTTGTTGGGGTGAAGTGGGGA
TTACTCCCTGTAACTGTTGGTTCAAATGTCTCGGTGAAGTCGCTTCTTATGCCCGCCATCGTATTGGGTGCGTTGTCTTT
TGCCTATGTTGTTCGTTTGACTAGGCAGTCCGTATCGGAAAATCTCACTGCTGATTATGTTCGCACTGCGCGAGCTAAAG
GCTTGAAGGGGTCGACCGTGACGATGCGCCATGTGCTGCGTAACTCGTTGATTCCAGTGGCCACATATTTGGGTGCTGAC
CTAGGCGCCTTGATGGCCGGTGCGATCGTGACTGAGGGCATATTCGGCATTAACGGTGTTGGTGGAACTATGTACCACGC
CATTTTGAAGGGCGAACCTACTACGGTGGTGTCATTTACCACCGTTCTCGTGATCGTCTACATCATCGCCAACTTGGTCG
TGGACTTAATCTACGCCCTGCTTGACCCAAGGATCCGCTATGCATAA

Upstream 100 bases:

>100_bases
CAAGGGATAACACCCCTGCCCGTGAACTCCGTCGTGAGCCCCGCGTCACCACACGCGGGGCTTCGGCGACGGATCTAGAT
GTTGAAATAAGGAACCACAT

Downstream 100 bases:

>100_bases
CAACAACTTTTCGCGTCGTGGCCAAGAGCATTTCGTTTCCAGCGTCGACGAAACCGGTCTGGGTGCTGTCGACGCCGTTG
CTGATGAGTCGGCACCAACC

Product: putative peptide transport system membrane protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MLRYIGRRLLQMIPVFFGATLLLYALVFLMPGDPVAALGGDRGLTEAARARISAEYNLDKPFLVQYLLYIKGIFQLDFGT
TFSGRPVAEAMAHAFPVTIKLAVMALIFEAVFGVIFGVIAGMRRGGIFDSTVLVLSLLVIAVPSFVIGFVFQFFVGVKWG
LLPVTVGSNVSVKSLLMPAIVLGALSFAYVVRLTRQSVSENLTADYVRTARAKGLKGSTVTMRHVLRNSLIPVATYLGAD
LGALMAGAIVTEGIFGINGVGGTMYHAILKGEPTTVVSFTTVLVIVYIIANLVVDLIYALLDPRIRYA

Sequences:

>Translated_308_residues
MLRYIGRRLLQMIPVFFGATLLLYALVFLMPGDPVAALGGDRGLTEAARARISAEYNLDKPFLVQYLLYIKGIFQLDFGT
TFSGRPVAEAMAHAFPVTIKLAVMALIFEAVFGVIFGVIAGMRRGGIFDSTVLVLSLLVIAVPSFVIGFVFQFFVGVKWG
LLPVTVGSNVSVKSLLMPAIVLGALSFAYVVRLTRQSVSENLTADYVRTARAKGLKGSTVTMRHVLRNSLIPVATYLGAD
LGALMAGAIVTEGIFGINGVGGTMYHAILKGEPTTVVSFTTVLVIVYIIANLVVDLIYALLDPRIRYA
>Mature_308_residues
MLRYIGRRLLQMIPVFFGATLLLYALVFLMPGDPVAALGGDRGLTEAARARISAEYNLDKPFLVQYLLYIKGIFQLDFGT
TFSGRPVAEAMAHAFPVTIKLAVMALIFEAVFGVIFGVIAGMRRGGIFDSTVLVLSLLVIAVPSFVIGFVFQFFVGVKWG
LLPVTVGSNVSVKSLLMPAIVLGALSFAYVVRLTRQSVSENLTADYVRTARAKGLKGSTVTMRHVLRNSLIPVATYLGAD
LGALMAGAIVTEGIFGINGVGGTMYHAILKGEPTTVVSFTTVLVIVYIIANLVVDLIYALLDPRIRYA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=38.8724035608309, Blast_Score=221, Evalue=4e-59,
Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=34.4051446945338, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787497, Length=311, Percent_Identity=33.7620578778135, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=33.4405144694534, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787761, Length=327, Percent_Identity=32.4159021406728, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=26.4925373134328, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788504, Length=358, Percent_Identity=22.9050279329609, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33175; Mature: 33175

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYIGRRLLQMIPVFFGATLLLYALVFLMPGDPVAALGGDRGLTEAARARISAEYNLDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCCCH
PFLVQYLLYIKGIFQLDFGTTFSGRPVAEAMAHAFPVTIKLAVMALIFEAVFGVIFGVIA
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMRRGGIFDSTVLVLSLLVIAVPSFVIGFVFQFFVGVKWGLLPVTVGSNVSVKSLLMPAI
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCEEEECCCCCHHHHHHHHHH
VLGALSFAYVVRLTRQSVSENLTADYVRTARAKGLKGSTVTMRHVLRNSLIPVATYLGAD
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHH
LGALMAGAIVTEGIFGINGVGGTMYHAILKGEPTTVVSFTTVLVIVYIIANLVVDLIYAL
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LDPRIRYA
HCCCCCCC
>Mature Secondary Structure
MLRYIGRRLLQMIPVFFGATLLLYALVFLMPGDPVAALGGDRGLTEAARARISAEYNLDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCCCH
PFLVQYLLYIKGIFQLDFGTTFSGRPVAEAMAHAFPVTIKLAVMALIFEAVFGVIFGVIA
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMRRGGIFDSTVLVLSLLVIAVPSFVIGFVFQFFVGVKWGLLPVTVGSNVSVKSLLMPAI
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCEEEECCCCCHHHHHHHHHH
VLGALSFAYVVRLTRQSVSENLTADYVRTARAKGLKGSTVTMRHVLRNSLIPVATYLGAD
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHH
LGALMAGAIVTEGIFGINGVGGTMYHAILKGEPTTVVSFTTVLVIVYIIANLVVDLIYAL
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LDPRIRYA
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]