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The map label for this gene is 38233479

Identifier: 38233479

GI number: 38233479

Start: 856347

End: 857252

Strand: Direct

Name: 38233479

Synonym: DIP0882

Alternate gene names: NA

Gene position: 856347-857252 (Clockwise)

Preceding gene: 38233478

Following gene: 38233482

Centisome position: 34.41

GC content: 53.64

Gene sequence:

>906_bases
GTGAGTATGAGTGCACAAGGGAAGAAAGCCGCAGAATCGACAACGAGCACACGTCCAGCCAAGCTCGACAAGCAAGCCTA
TGAAGCAGAACTAAAGCGCTTGCAGGCGGAGCTAGTCGATATGCAGCAGTGGGTTGTAGAAACAGGCGCCCGCGTGGTCA
TTATCATGGAAGGTCGCGACGCTGCAGGGAAAGGCTCTGCGATTAAGCGAATGACGCAGTACCTCAACCCAAGAACATGC
CGCATCGAAGCACTGCCTGCACCTAACTCACGGGAACAAGGTCAGTGGTACTTCCAGCGGTACGTCGAAAAGCTGCCCAC
CGCAGGCGAGATCGTGATCTTCGACCGTTCGTGGTACAACCGTGCCGGTGTCGAACGCGTGATGGGCTTTTGTACCTCGC
AAGAGTATCGACGTTTCCTCCACCAAGCCCCAATTTTTGAACGCCTCCTAGTCGAAGACGGCATCATGCTGCGCAAATAC
TGGTTCTCAGTCTCCGACGAAGAACAAATTGCGCGCTTTAAGTCGCGTCGCAACGATCCGCTGCGTCGCTGGAAGCTGTC
GCCCATGGACCTACAGTCGATCACTCGCTGGGAAGATTATTCTCGCGCCAAAGACGAGATGTTTGTGCACACAGACATCC
CCTCAGCACCGTGGTACACCGTGGAGTCGGAGGATAAAAAGCGTTCACGCATCAACGTCATTAGCCATTTGCTTTCGACG
ATCCCCTACGAGAAGATCGATCGCCCGCTACCCGACATCCCTGAACGCCCAGCCCAAGACAAAGACTACAAGCGGCCACC
ACGTTCTGATTTCCGCTACGTTCCCGATGTCGCTGCCACATTTGAAAAAGGCGCAGGATCTGGCAAAAAGAAAAAGACAC
CAAAGTCAAAGAAGAACAAAAAGTAA

Upstream 100 bases:

>100_bases
CTCAGACAAACAAGCACCGGCTGAAATACCCCTAAAGGAGACATACGAGCCGGTTTGTGTGTCTTAATGCCCCAGGCGGT
AGGCGTGGTCGGTAGGGTTA

Downstream 100 bases:

>100_bases
CTCATTGCACTCCTAGCAAAAACTCCCTTGGCACTCATGCGATCAACAGAGACCGAGGGAGTTTTTTCATAGTGGTTTAG
CGCGTAGTTTCCCCACGGGG

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: URF2 [H]

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSMSAQGKKAAESTTSTRPAKLDKQAYEAELKRLQAELVDMQQWVVETGARVVIIMEGRDAAGKGSAIKRMTQYLNPRTC
RIEALPAPNSREQGQWYFQRYVEKLPTAGEIVIFDRSWYNRAGVERVMGFCTSQEYRRFLHQAPIFERLLVEDGIMLRKY
WFSVSDEEQIARFKSRRNDPLRRWKLSPMDLQSITRWEDYSRAKDEMFVHTDIPSAPWYTVESEDKKRSRINVISHLLST
IPYEKIDRPLPDIPERPAQDKDYKRPPRSDFRYVPDVAATFEKGAGSGKKKKTPKSKKNKK

Sequences:

>Translated_301_residues
MSMSAQGKKAAESTTSTRPAKLDKQAYEAELKRLQAELVDMQQWVVETGARVVIIMEGRDAAGKGSAIKRMTQYLNPRTC
RIEALPAPNSREQGQWYFQRYVEKLPTAGEIVIFDRSWYNRAGVERVMGFCTSQEYRRFLHQAPIFERLLVEDGIMLRKY
WFSVSDEEQIARFKSRRNDPLRRWKLSPMDLQSITRWEDYSRAKDEMFVHTDIPSAPWYTVESEDKKRSRINVISHLLST
IPYEKIDRPLPDIPERPAQDKDYKRPPRSDFRYVPDVAATFEKGAGSGKKKKTPKSKKNKK
>Mature_300_residues
SMSAQGKKAAESTTSTRPAKLDKQAYEAELKRLQAELVDMQQWVVETGARVVIIMEGRDAAGKGSAIKRMTQYLNPRTCR
IEALPAPNSREQGQWYFQRYVEKLPTAGEIVIFDRSWYNRAGVERVMGFCTSQEYRRFLHQAPIFERLLVEDGIMLRKYW
FSVSDEEQIARFKSRRNDPLRRWKLSPMDLQSITRWEDYSRAKDEMFVHTDIPSAPWYTVESEDKKRSRINVISHLLSTI
PYEKIDRPLPDIPERPAQDKDYKRPPRSDFRYVPDVAATFEKGAGSGKKKKTPKSKKNKK

Specific function: Unknown

COG id: COG2326

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011993
- InterPro:   IPR022488 [H]

Pfam domain/function: PF03976 PPK2 [H]

EC number: NA

Molecular weight: Translated: 35089; Mature: 34958

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMSAQGKKAAESTTSTRPAKLDKQAYEAELKRLQAELVDMQQWVVETGARVVIIMEGRD
CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
AAGKGSAIKRMTQYLNPRTCRIEALPAPNSREQGQWYFQRYVEKLPTAGEIVIFDRSWYN
CCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHH
RAGVERVMGFCTSQEYRRFLHQAPIFERLLVEDGIMLRKYWFSVSDEEQIARFKSRRNDP
HHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCH
LRRWKLSPMDLQSITRWEDYSRAKDEMFVHTDIPSAPWYTVESEDKKRSRINVISHLLST
HHHCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHH
IPYEKIDRPLPDIPERPAQDKDYKRPPRSDFRYVPDVAATFEKGAGSGKKKKTPKSKKNK
CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
K
C
>Mature Secondary Structure 
SMSAQGKKAAESTTSTRPAKLDKQAYEAELKRLQAELVDMQQWVVETGARVVIIMEGRD
CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
AAGKGSAIKRMTQYLNPRTCRIEALPAPNSREQGQWYFQRYVEKLPTAGEIVIFDRSWYN
CCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHH
RAGVERVMGFCTSQEYRRFLHQAPIFERLLVEDGIMLRKYWFSVSDEEQIARFKSRRNDP
HHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCH
LRRWKLSPMDLQSITRWEDYSRAKDEMFVHTDIPSAPWYTVESEDKKRSRINVISHLLST
HHHCCCCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHH
IPYEKIDRPLPDIPERPAQDKDYKRPPRSDFRYVPDVAATFEKGAGSGKKKKTPKSKKNK
CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8199775 [H]