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The map label for this gene is ycfH [C]

Identifier: 38233470

GI number: 38233470

Start: 847895

End: 848749

Strand: Direct

Name: ycfH [C]

Synonym: DIP0873

Alternate gene names: 38233470

Gene position: 847895-848749 (Clockwise)

Preceding gene: 38233469

Following gene: 38233471

Centisome position: 34.07

GC content: 52.87

Gene sequence:

>855_bases
ATGTCAAAAAAGAAGCCTCGTCCGATTCCTGTTCCAGCCGATACCATTCCAGGGCTTATCGACGCCCACACACACATTGC
CTCGTGTGGTGCAACGGAACAGGATGAAGTAGATGCTTTCGTGCAACGAGCTCTTGCTGCCGGTGTTGAGCGAATCTGTA
CCGTAGGCGACGGGTTGGCGGAGGCTGAATTTGCGCTTCAAGCAGCGCAGATGAATTCTCGTGTGTTTGCGGCATGCGCT
ATCCATCCAACACGCGCTCGTGAGCTTGATCAAGCAGCCCGTAACCGGTTGACTGAGATGGCCCATGATCCGCGCTGTGT
TGCAATTGGAGAAACCGGTATTGATACCTACTGGATTACTCACGACCCCGACAACACCGCTGATCTTGAAACTCAAGAAG
AAGCTTTGCGATGGCACATTGATCTAGCCGTTGCCACTGGTAAAGCCTTGATGATTCACAATCGTGAGGGCGATGACCAC
CTCATGCGTATTCTTGAGGATTCGCCTCAGCCGCCAGAAACTATCCTGCACTGTTTTTCCTCACCGATTGATGTGGCGAA
GCAAGCCCTTGATCGTGGATATGTGTTGAGTTTTGCTGGCAACGTGACTTTCAAACGTAACGAGGAGCTACGTGAGGCTG
CGCGGATAGCTCCTATTTCACAGTTGCTGATTGAAACTGACGCCCCTTACATGACTCCCGAGCCTTTTCGAGGTGCACGC
AATGAGTCGGCATTGATTGGGCATACAGCGTTGTGCGTTGCCGCCTCCCGTGGGGAATCGGTGGCTGACTGCGTTGCGGG
AATATCTGCGACATTTGATCGTGTGTATGGTGTGGACACCTCGTTTGGGGCGTGA

Upstream 100 bases:

>100_bases
GAAGCCGAAGCCGCTCATTGCCAAGTTGGATCCAGAGCTTGGAGAAACCGGCCCTGAGTGGGCTCCAGTTAATCCGTAGT
TCTTTTCTATACTGGCTAGC

Downstream 100 bases:

>100_bases
GTTAACAGTTGTGATTGGTGTGTTGAGCTTGAAAAGAAGGGCTCGACAATGCTGTGCTGTTATCGTATTGTTATTTTTTA
TTAACTCCTCAGCTTCGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSKKKPRPIPVPADTIPGLIDAHTHIASCGATEQDEVDAFVQRALAAGVERICTVGDGLAEAEFALQAAQMNSRVFAACA
IHPTRARELDQAARNRLTEMAHDPRCVAIGETGIDTYWITHDPDNTADLETQEEALRWHIDLAVATGKALMIHNREGDDH
LMRILEDSPQPPETILHCFSSPIDVAKQALDRGYVLSFAGNVTFKRNEELREAARIAPISQLLIETDAPYMTPEPFRGAR
NESALIGHTALCVAASRGESVADCVAGISATFDRVYGVDTSFGA

Sequences:

>Translated_284_residues
MSKKKPRPIPVPADTIPGLIDAHTHIASCGATEQDEVDAFVQRALAAGVERICTVGDGLAEAEFALQAAQMNSRVFAACA
IHPTRARELDQAARNRLTEMAHDPRCVAIGETGIDTYWITHDPDNTADLETQEEALRWHIDLAVATGKALMIHNREGDDH
LMRILEDSPQPPETILHCFSSPIDVAKQALDRGYVLSFAGNVTFKRNEELREAARIAPISQLLIETDAPYMTPEPFRGAR
NESALIGHTALCVAASRGESVADCVAGISATFDRVYGVDTSFGA
>Mature_283_residues
SKKKPRPIPVPADTIPGLIDAHTHIASCGATEQDEVDAFVQRALAAGVERICTVGDGLAEAEFALQAAQMNSRVFAACAI
HPTRARELDQAARNRLTEMAHDPRCVAIGETGIDTYWITHDPDNTADLETQEEALRWHIDLAVATGKALMIHNREGDDHL
MRILEDSPQPPETILHCFSSPIDVAKQALDRGYVLSFAGNVTFKRNEELREAARIAPISQLLIETDAPYMTPEPFRGARN
ESALIGHTALCVAASRGESVADCVAGISATFDRVYGVDTSFGA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=210, Percent_Identity=28.0952380952381, Blast_Score=82, Evalue=6e-16,
Organism=Escherichia coli, GI1787342, Length=265, Percent_Identity=29.811320754717, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI48994985, Length=248, Percent_Identity=30.241935483871, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082439, Length=225, Percent_Identity=27.5555555555556, Blast_Score=78, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71980746, Length=264, Percent_Identity=26.5151515151515, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=206, Percent_Identity=28.1553398058252, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24648690, Length=205, Percent_Identity=28.2926829268293, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24586117, Length=220, Percent_Identity=25.9090909090909, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI221330018, Length=220, Percent_Identity=25.9090909090909, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30783; Mature: 30652

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKKPRPIPVPADTIPGLIDAHTHIASCGATEQDEVDAFVQRALAAGVERICTVGDGLA
CCCCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
EAEFALQAAQMNSRVFAACAIHPTRARELDQAARNRLTEMAHDPRCVAIGETGIDTYWIT
HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEE
HDPDNTADLETQEEALRWHIDLAVATGKALMIHNREGDDHLMRILEDSPQPPETILHCFS
ECCCCCCCCHHHHHHHHEEEEEEEECCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHC
SPIDVAKQALDRGYVLSFAGNVTFKRNEELREAARIAPISQLLIETDAPYMTPEPFRGAR
CHHHHHHHHHCCCEEEEEECCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
NESALIGHTALCVAASRGESVADCVAGISATFDRVYGVDTSFGA
CCCEEECHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SKKKPRPIPVPADTIPGLIDAHTHIASCGATEQDEVDAFVQRALAAGVERICTVGDGLA
CCCCCCCCCCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHH
EAEFALQAAQMNSRVFAACAIHPTRARELDQAARNRLTEMAHDPRCVAIGETGIDTYWIT
HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEE
HDPDNTADLETQEEALRWHIDLAVATGKALMIHNREGDDHLMRILEDSPQPPETILHCFS
ECCCCCCCCHHHHHHHHEEEEEEEECCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHC
SPIDVAKQALDRGYVLSFAGNVTFKRNEELREAARIAPISQLLIETDAPYMTPEPFRGAR
CHHHHHHHHHCCCEEEEEECCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
NESALIGHTALCVAASRGESVADCVAGISATFDRVYGVDTSFGA
CCCEEECHHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]